Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 ENPP7P14-201ENST00000621765 1040 ntBASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
TM9SF3Q9HD45 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 AL139094.1-201ENST00000405549 1188 ntBASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 SLC25A24P2-201ENST00000415059 510 ntBASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 IGHJ2P-201ENST00000454480 60 ntBASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 AC004066.1-201ENST00000502488 802 ntBASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 KC6-205ENST00000599934 556 ntTSL 4 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 PPA1-206ENST00000625364 644 ntTSL 5 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 AL109954.1-202ENST00000564051 2148 ntBASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
TM9SF3Q9HD45 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 AC007787.1-201ENST00000588095 1583 ntBASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 AL645937.2-201ENST00000396808 931 ntBASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 AC091804.1-201ENST00000486888 567 ntBASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 SCARNA20.5-201ENST00000516991 142 ntBASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 ARL16-210ENST00000574938 751 ntTSL 2 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.16■□□□□ 0.02
TM9SF3Q9HD45 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 65.6 ms