Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
CHMP1AQ9HD42 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 RPL5P21-201ENST00000404620 815 ntBASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 AC097359.3-201ENST00000603982 1210 ntBASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 C20orf181-201ENST00000623918 480 ntBASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CHMP1AQ9HD42 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 SULF1-202ENST00000402687 4891 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 FRMD8-201ENST00000317568 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 ZBED1P1-201ENST00000502364 1930 ntBASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 CD82-202ENST00000342935 967 ntTSL 5 BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 TEX30-205ENST00000376029 959 ntTSL 2 BASIC13.16□□□□□ -0.3
CHMP1AQ9HD42 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms