Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC12.92□□□□□ -0.34
COL12A1Q99715 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 AC020904.3-201ENST00000624199 442 ntBASIC12.92□□□□□ -0.34
COL12A1Q99715 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC12.92□□□□□ -0.34
COL12A1Q99715 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
COL12A1Q99715 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
COL12A1Q99715 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.91□□□□□ -0.34
COL12A1Q99715 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.91□□□□□ -0.34
COL12A1Q99715 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC12.91□□□□□ -0.34
COL12A1Q99715 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC12.91□□□□□ -0.34
COL12A1Q99715 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC12.91□□□□□ -0.34
COL12A1Q99715 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC12.91□□□□□ -0.34
COL12A1Q99715 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
COL12A1Q99715 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
COL12A1Q99715 AC002044.2-201ENST00000624910 970 ntBASIC12.91□□□□□ -0.34
COL12A1Q99715 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC12.91□□□□□ -0.34
COL12A1Q99715 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
COL12A1Q99715 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
COL12A1Q99715 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
COL12A1Q99715 TNRC18P3-201ENST00000441896 2691 ntBASIC12.91□□□□□ -0.34
COL12A1Q99715 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
COL12A1Q99715 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.34
COL12A1Q99715 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC12.91□□□□□ -0.34
COL12A1Q99715 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.91□□□□□ -0.34
COL12A1Q99715 CSNK1G2P1-201ENST00000442675 955 ntBASIC12.91□□□□□ -0.34
COL12A1Q99715 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 IGHEP2-201ENST00000519308 1256 ntBASIC12.91□□□□□ -0.34
COL12A1Q99715 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.91□□□□□ -0.34
COL12A1Q99715 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC12.91□□□□□ -0.34
COL12A1Q99715 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC12.91□□□□□ -0.34
COL12A1Q99715 EEF1DP7-201ENST00000580496 513 ntBASIC12.91□□□□□ -0.34
COL12A1Q99715 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC12.91□□□□□ -0.34
COL12A1Q99715 AC009145.4-201ENST00000625119 1294 ntBASIC12.91□□□□□ -0.34
COL12A1Q99715 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 FTX-216ENST00000638985 1367 ntTSL 5 BASIC12.91□□□□□ -0.34
COL12A1Q99715 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 PAUPAR-201ENST00000630360 2965 ntBASIC12.91□□□□□ -0.34
COL12A1Q99715 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC12.91□□□□□ -0.34
COL12A1Q99715 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC12.91□□□□□ -0.34
COL12A1Q99715 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 FAS-202ENST00000352159 1722 ntTSL 5 BASIC12.91□□□□□ -0.34
COL12A1Q99715 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL12A1Q99715 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
COL12A1Q99715 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC12.9□□□□□ -0.34
COL12A1Q99715 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL12A1Q99715 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC12.9□□□□□ -0.34
COL12A1Q99715 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL12A1Q99715 GEMIN8P4-201ENST00000380526 729 ntBASIC12.9□□□□□ -0.34
COL12A1Q99715 FDPSP7-201ENST00000429043 1054 ntBASIC12.9□□□□□ -0.34
COL12A1Q99715 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC12.9□□□□□ -0.34
COL12A1Q99715 RNA5SP417-201ENST00000516459 108 ntBASIC12.9□□□□□ -0.34
COL12A1Q99715 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC12.9□□□□□ -0.34
COL12A1Q99715 MIR6893-201ENST00000613458 69 ntBASIC12.9□□□□□ -0.34
COL12A1Q99715 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL12A1Q99715 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC12.9□□□□□ -0.34
COL12A1Q99715 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.9□□□□□ -0.34
COL12A1Q99715 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL12A1Q99715 REXO1L4P-201ENST00000605109 1937 ntBASIC12.9□□□□□ -0.34
COL12A1Q99715 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC12.9□□□□□ -0.34
COL12A1Q99715 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL12A1Q99715 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL12A1Q99715 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
COL12A1Q99715 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC12.9□□□□□ -0.34
COL12A1Q99715 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC12.9□□□□□ -0.34
COL12A1Q99715 RN7SKP109-201ENST00000410592 316 ntBASIC12.9□□□□□ -0.34
COL12A1Q99715 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC12.9□□□□□ -0.34
COL12A1Q99715 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC12.9□□□□□ -0.34
COL12A1Q99715 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL12A1Q99715 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC12.9□□□□□ -0.34
COL12A1Q99715 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
COL12A1Q99715 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC12.9□□□□□ -0.34
COL12A1Q99715 ABR-203ENST00000536794 2213 ntTSL 2 BASIC12.9□□□□□ -0.34
COL12A1Q99715 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL12A1Q99715 MARK2P16-201ENST00000605714 1723 ntBASIC12.9□□□□□ -0.34
COL12A1Q99715 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
COL12A1Q99715 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC12.9□□□□□ -0.34
COL12A1Q99715 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC12.9□□□□□ -0.34
COL12A1Q99715 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL12A1Q99715 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
COL12A1Q99715 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
COL12A1Q99715 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
COL12A1Q99715 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.35
COL12A1Q99715 AL121949.3-201ENST00000406684 385 ntBASIC12.9□□□□□ -0.35
COL12A1Q99715 HIST1H2APS2-201ENST00000454426 370 ntBASIC12.9□□□□□ -0.35
COL12A1Q99715 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC12.9□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms