Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 MROH4P-201ENST00000431302 1578 ntBASIC14.62□□□□□ -0.07
VMP1Q96GC9 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 AC104596.2-201ENST00000512793 793 ntBASIC14.62□□□□□ -0.07
VMP1Q96GC9 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 AC007431.3-201ENST00000623221 587 ntBASIC14.62□□□□□ -0.07
VMP1Q96GC9 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 AC025048.6-201ENST00000634326 1161 ntBASIC14.62□□□□□ -0.07
VMP1Q96GC9 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 AC105233.6-201ENST00000642093 218 ntBASIC14.62□□□□□ -0.07
VMP1Q96GC9 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
VMP1Q96GC9 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
VMP1Q96GC9 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 AC123567.1-201ENST00000548294 1261 ntBASIC14.61□□□□□ -0.07
VMP1Q96GC9 CHCHD2P3-201ENST00000603038 451 ntBASIC14.61□□□□□ -0.07
VMP1Q96GC9 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 AC091951.1-201ENST00000512854 2465 ntBASIC14.61□□□□□ -0.07
VMP1Q96GC9 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.61□□□□□ -0.07
VMP1Q96GC9 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
VMP1Q96GC9 AC009090.5-201ENST00000624886 2285 ntBASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms