Protein–RNA interactions for Protein: Q8NHV4

NEDD1, Protein NEDD1, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1Q8NHV4 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 SMS-201ENST00000379404 1174 ntTSL 3 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 GPAA1P2-201ENST00000417923 928 ntBASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 AC243960.2-201ENST00000600996 747 ntBASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.52■□□□□ 0.4
NEDD1Q8NHV4 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.52■□□□□ 0.39
NEDD1Q8NHV4 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.52■□□□□ 0.39
NEDD1Q8NHV4 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.52■□□□□ 0.39
NEDD1Q8NHV4 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.52■□□□□ 0.39
NEDD1Q8NHV4 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
NEDD1Q8NHV4 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.52■□□□□ 0.39
NEDD1Q8NHV4 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
NEDD1Q8NHV4 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
NEDD1Q8NHV4 LINC00528-201ENST00000600723 2160 ntBASIC17.52■□□□□ 0.39
NEDD1Q8NHV4 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC17.52■□□□□ 0.39
NEDD1Q8NHV4 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.52■□□□□ 0.39
NEDD1Q8NHV4 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 AC104640.1-201ENST00000562617 2109 ntBASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 AC011270.2-201ENST00000624293 2550 ntBASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 SHC1P1-201ENST00000425230 1745 ntBASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 AC004898.1-201ENST00000451057 766 ntBASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 GCOM2-201ENST00000509133 1104 ntBASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 NOP2-211ENST00000540228 668 ntTSL 2 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 VPS18-202ENST00000558474 873 ntTSL 3 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 AC005730.2-201ENST00000564549 1184 ntBASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 AC008825.2-201ENST00000603374 718 ntBASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.51■□□□□ 0.39
NEDD1Q8NHV4 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 LINC01101-201ENST00000622953 1884 ntBASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 PTPA-218ENST00000435132 618 ntTSL 2 BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 AC009955.4-201ENST00000597192 544 ntBASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 AC244093.1-201ENST00000610837 814 ntBASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
NEDD1Q8NHV4 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms