Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 Z82170.1-201ENST00000625081 3192 ntBASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 HLA-H-201ENST00000383620 1096 ntBASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 MIR943-201ENST00000401286 94 ntBASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 AL691447.1-201ENST00000419456 387 ntBASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 IGHV3-42-201ENST00000520410 361 ntBASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 AC140878.1-201ENST00000565277 250 ntBASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 AL138918.1-201ENST00000568306 659 ntBASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 SSH2-211ENST00000590153 570 ntTSL 4 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 CFTRP2-201ENST00000634304 199 ntBASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
DEPDC4Q8N2C3 AC118758.2-201ENST00000614242 2813 ntBASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 AC136759.1-202ENST00000530858 2194 ntBASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.23□□□□□ -0.13
DEPDC4Q8N2C3 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms