Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 AL009178.2-201ENST00000597278 2719 ntBASIC14.14□□□□□ -0.15
BEST3Q8N1M1 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 AC009090.5-201ENST00000624886 2285 ntBASIC14.13□□□□□ -0.15
BEST3Q8N1M1 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 APOC3-202ENST00000375345 604 ntTSL 5 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 CNN2P8-201ENST00000421872 913 ntBASIC14.13□□□□□ -0.15
BEST3Q8N1M1 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 RN7SL219P-201ENST00000582872 296 ntBASIC14.13□□□□□ -0.15
BEST3Q8N1M1 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 AC148477.4-201ENST00000613430 1793 ntBASIC14.13□□□□□ -0.15
BEST3Q8N1M1 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 AC007787.1-201ENST00000588095 1583 ntBASIC14.13□□□□□ -0.15
BEST3Q8N1M1 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 AC013268.4-201ENST00000637413 2228 ntBASIC14.13□□□□□ -0.15
BEST3Q8N1M1 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
BEST3Q8N1M1 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 BRWD1P1-201ENST00000401091 371 ntBASIC14.12□□□□□ -0.15
BEST3Q8N1M1 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 AL355994.2-201ENST00000447882 704 ntBASIC14.12□□□□□ -0.15
BEST3Q8N1M1 AL590640.2-201ENST00000457038 527 ntBASIC14.12□□□□□ -0.15
BEST3Q8N1M1 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 AC078819.1-201ENST00000547454 765 ntBASIC14.12□□□□□ -0.15
BEST3Q8N1M1 AC012085.1-201ENST00000548270 765 ntBASIC14.12□□□□□ -0.15
BEST3Q8N1M1 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 AC010328.2-201ENST00000597698 1111 ntBASIC14.12□□□□□ -0.15
BEST3Q8N1M1 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.12□□□□□ -0.15
BEST3Q8N1M1 AC009542.2-202ENST00000619004 1067 ntBASIC14.12□□□□□ -0.15
BEST3Q8N1M1 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 TUBB1P2-201ENST00000422712 1306 ntBASIC14.12□□□□□ -0.15
BEST3Q8N1M1 TUBB1P1-201ENST00000503144 1300 ntBASIC14.12□□□□□ -0.15
BEST3Q8N1M1 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
BEST3Q8N1M1 AL158070.2-201ENST00000623713 1621 ntBASIC14.12□□□□□ -0.15
BEST3Q8N1M1 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms