Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
ATL3Q6DD88 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC17.29■□□□□ 0.36
ATL3Q6DD88 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATL3Q6DD88 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.29■□□□□ 0.36
ATL3Q6DD88 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC17.29■□□□□ 0.36
ATL3Q6DD88 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATL3Q6DD88 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATL3Q6DD88 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.29■□□□□ 0.36
ATL3Q6DD88 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
ATL3Q6DD88 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
ATL3Q6DD88 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
ATL3Q6DD88 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
ATL3Q6DD88 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
ATL3Q6DD88 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 GOLGA8VP-201ENST00000559009 1798 ntBASIC17.28■□□□□ 0.36
ATL3Q6DD88 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 FLJ16779-201ENST00000612722 7638 ntBASIC17.28■□□□□ 0.36
ATL3Q6DD88 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 DUX4L27-201ENST00000554796 1261 ntBASIC17.28■□□□□ 0.36
ATL3Q6DD88 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 ABR-228ENST00000574437 3196 ntTSL 5 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.28■□□□□ 0.36
ATL3Q6DD88 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
ATL3Q6DD88 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 AL359881.3-201ENST00000602640 1721 ntBASIC17.27■□□□□ 0.36
ATL3Q6DD88 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.27■□□□□ 0.36
ATL3Q6DD88 TLE1P1-201ENST00000422965 589 ntBASIC17.27■□□□□ 0.36
ATL3Q6DD88 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 AC114812.1-204ENST00000449669 728 ntBASIC17.27■□□□□ 0.36
ATL3Q6DD88 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 AC022616.1-201ENST00000518688 554 ntBASIC17.27■□□□□ 0.36
ATL3Q6DD88 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 TPRX2P-201ENST00000535362 881 ntBASIC17.27■□□□□ 0.36
ATL3Q6DD88 STOM-203ENST00000538954 1257 ntTSL 5 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
ATL3Q6DD88 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
ATL3Q6DD88 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
ATL3Q6DD88 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
ATL3Q6DD88 API5-203ENST00000455725 2257 ntTSL 2 BASIC17.27■□□□□ 0.35
ATL3Q6DD88 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
ATL3Q6DD88 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms