Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS53Q5VIR6 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 AL390755.1-201ENST00000623716 2027 ntBASIC18.32■□□□□ 0.52
VPS53Q5VIR6 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 GAPDHP21-201ENST00000450301 1010 ntBASIC18.32■□□□□ 0.52
VPS53Q5VIR6 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 AC008735.3-201ENST00000596646 500 ntBASIC18.32■□□□□ 0.52
VPS53Q5VIR6 PRSS30P-206ENST00000641773 873 ntBASIC18.32■□□□□ 0.52
VPS53Q5VIR6 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 NID2-208ENST00000617139 3827 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS53Q5VIR6 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 AL360270.3-201ENST00000609118 1348 ntBASIC18.31■□□□□ 0.52
VPS53Q5VIR6 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 ACTG1P3-201ENST00000431775 1114 ntBASIC18.31■□□□□ 0.52
VPS53Q5VIR6 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 AP001063.1-201ENST00000568332 529 ntBASIC18.31■□□□□ 0.52
VPS53Q5VIR6 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS53Q5VIR6 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms