Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC10.79□□□□□ -0.68
RPL39P62891 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
RPL39P62891 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
RPL39P62891 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
RPL39P62891 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
RPL39P62891 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
RPL39P62891 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
RPL39P62891 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 COL6A4P2-202ENST00000504443 2753 ntBASIC10.78□□□□□ -0.68
RPL39P62891 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC10.78□□□□□ -0.68
RPL39P62891 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
RPL39P62891 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 AC005562.1-201ENST00000583030 3219 ntBASIC10.78□□□□□ -0.68
RPL39P62891 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
RPL39P62891 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 AL671277.1-201ENST00000429656 993 ntBASIC10.78□□□□□ -0.68
RPL39P62891 AC007967.2-201ENST00000432613 625 ntBASIC10.78□□□□□ -0.68
RPL39P62891 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC10.78□□□□□ -0.68
RPL39P62891 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC10.78□□□□□ -0.68
RPL39P62891 PENK-208ENST00000523051 772 ntTSL 5 BASIC10.78□□□□□ -0.68
RPL39P62891 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC10.78□□□□□ -0.68
RPL39P62891 CALM3-211ENST00000598871 561 ntTSL 4 BASIC10.78□□□□□ -0.68
RPL39P62891 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
RPL39P62891 AL513190.1-201ENST00000621254 727 ntBASIC10.78□□□□□ -0.68
RPL39P62891 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
RPL39P62891 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
RPL39P62891 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC10.78□□□□□ -0.68
RPL39P62891 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC10.78□□□□□ -0.68
RPL39P62891 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.68
RPL39P62891 AC055811.4-201ENST00000624039 1754 ntBASIC10.77□□□□□ -0.68
RPL39P62891 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC10.77□□□□□ -0.68
RPL39P62891 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC10.77□□□□□ -0.68
RPL39P62891 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPL39P62891 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPL39P62891 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC10.77□□□□□ -0.68
RPL39P62891 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPL39P62891 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
RPL39P62891 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC10.77□□□□□ -0.68
RPL39P62891 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPL39P62891 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC10.77□□□□□ -0.68
RPL39P62891 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC10.77□□□□□ -0.68
RPL39P62891 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC10.77□□□□□ -0.68
RPL39P62891 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
RPL39P62891 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC10.77□□□□□ -0.68
RPL39P62891 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 LSS-211ENST00000522411 2523 ntTSL 2 BASIC10.77□□□□□ -0.69
RPL39P62891 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC10.77□□□□□ -0.69
RPL39P62891 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 USP4-203ENST00000415188 1454 ntTSL 3 BASIC10.77□□□□□ -0.69
RPL39P62891 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC10.77□□□□□ -0.69
RPL39P62891 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
RPL39P62891 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC10.77□□□□□ -0.69
RPL39P62891 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC10.77□□□□□ -0.69
RPL39P62891 SYS1-203ENST00000414310 795 ntTSL 3 BASIC10.77□□□□□ -0.69
RPL39P62891 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC10.77□□□□□ -0.69
RPL39P62891 AL355306.1-201ENST00000415580 579 ntBASIC10.77□□□□□ -0.69
RPL39P62891 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC10.77□□□□□ -0.69
RPL39P62891 PPIE-208ENST00000470213 927 ntTSL 3 BASIC10.77□□□□□ -0.69
RPL39P62891 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC10.77□□□□□ -0.69
RPL39P62891 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC10.77□□□□□ -0.69
RPL39P62891 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC10.77□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms