Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
MSH6P52701 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC20.58■□□□□ 0.89
MSH6P52701 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH6P52701 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH6P52701 TNRC18P3-201ENST00000441896 2691 ntBASIC20.58■□□□□ 0.88
MSH6P52701 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH6P52701 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
MSH6P52701 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH6P52701 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
MSH6P52701 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH6P52701 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC20.58■□□□□ 0.88
MSH6P52701 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC20.58■□□□□ 0.88
MSH6P52701 AC244197.1-201ENST00000456494 951 ntBASIC20.58■□□□□ 0.88
MSH6P52701 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
MSH6P52701 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC20.58■□□□□ 0.88
MSH6P52701 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
MSH6P52701 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
MSH6P52701 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC20.58■□□□□ 0.88
MSH6P52701 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC20.58■□□□□ 0.88
MSH6P52701 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
MSH6P52701 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC20.57■□□□□ 0.88
MSH6P52701 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC20.57■□□□□ 0.88
MSH6P52701 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
MSH6P52701 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
MSH6P52701 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
MSH6P52701 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC20.57■□□□□ 0.88
MSH6P52701 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC20.57■□□□□ 0.88
MSH6P52701 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC20.57■□□□□ 0.88
MSH6P52701 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC20.57■□□□□ 0.88
MSH6P52701 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC20.57■□□□□ 0.88
MSH6P52701 GUSBP10-201ENST00000417412 665 ntBASIC20.57■□□□□ 0.88
MSH6P52701 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC20.57■□□□□ 0.88
MSH6P52701 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC20.57■□□□□ 0.88
MSH6P52701 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC20.57■□□□□ 0.88
MSH6P52701 AC138701.2-201ENST00000553634 226 ntBASIC20.57■□□□□ 0.88
MSH6P52701 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC20.57■□□□□ 0.88
MSH6P52701 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC20.57■□□□□ 0.88
MSH6P52701 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
MSH6P52701 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
MSH6P52701 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC20.56■□□□□ 0.88
MSH6P52701 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC20.56■□□□□ 0.88
MSH6P52701 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
MSH6P52701 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC20.56■□□□□ 0.88
MSH6P52701 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC20.56■□□□□ 0.88
MSH6P52701 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
MSH6P52701 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
MSH6P52701 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC20.56■□□□□ 0.88
MSH6P52701 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC20.56■□□□□ 0.88
MSH6P52701 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC20.56■□□□□ 0.88
MSH6P52701 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC20.56■□□□□ 0.88
MSH6P52701 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC20.56■□□□□ 0.88
MSH6P52701 RNA5SP417-201ENST00000516459 108 ntBASIC20.56■□□□□ 0.88
MSH6P52701 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC20.56■□□□□ 0.88
MSH6P52701 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC20.56■□□□□ 0.88
MSH6P52701 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC20.56■□□□□ 0.88
MSH6P52701 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
MSH6P52701 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC20.55■□□□□ 0.88
MSH6P52701 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH6P52701 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MSH6P52701 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
MSH6P52701 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC20.55■□□□□ 0.88
MSH6P52701 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
MSH6P52701 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
MSH6P52701 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
MSH6P52701 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
MSH6P52701 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC20.55■□□□□ 0.88
MSH6P52701 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC20.55■□□□□ 0.88
MSH6P52701 AL512306.1-201ENST00000432698 848 ntBASIC20.55■□□□□ 0.88
MSH6P52701 AL035414.1-201ENST00000451327 857 ntBASIC20.55■□□□□ 0.88
MSH6P52701 PGAM1P12-201ENST00000505622 748 ntBASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms