Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC17.45■□□□□ 0.38
CTCFP49711 DBP-202ENST00000593500 712 ntTSL 2 BASIC17.45■□□□□ 0.38
CTCFP49711 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CTCFP49711 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.45■□□□□ 0.38
CTCFP49711 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CTCFP49711 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CTCFP49711 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CTCFP49711 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
CTCFP49711 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.44■□□□□ 0.38
CTCFP49711 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CTCFP49711 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.44■□□□□ 0.38
CTCFP49711 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
CTCFP49711 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CTCFP49711 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.44■□□□□ 0.38
CTCFP49711 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CTCFP49711 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC17.44■□□□□ 0.38
CTCFP49711 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CTCFP49711 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.44■□□□□ 0.38
CTCFP49711 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CTCFP49711 NHP2P1-201ENST00000335274 462 ntBASIC17.44■□□□□ 0.38
CTCFP49711 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CTCFP49711 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.44■□□□□ 0.38
CTCFP49711 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC17.44■□□□□ 0.38
CTCFP49711 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.44■□□□□ 0.38
CTCFP49711 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CTCFP49711 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC17.44■□□□□ 0.38
CTCFP49711 VDAC1P1-201ENST00000439229 848 ntBASIC17.44■□□□□ 0.38
CTCFP49711 AL354861.1-201ENST00000445213 355 ntBASIC17.44■□□□□ 0.38
CTCFP49711 NDUFS6P1-201ENST00000485187 316 ntBASIC17.44■□□□□ 0.38
CTCFP49711 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.44■□□□□ 0.38
CTCFP49711 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC17.44■□□□□ 0.38
CTCFP49711 HMGB1P24-201ENST00000611897 328 ntBASIC17.44■□□□□ 0.38
CTCFP49711 TP53-221ENST00000615910 1149 ntTSL 5 BASIC17.44■□□□□ 0.38
CTCFP49711 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC17.44■□□□□ 0.38
CTCFP49711 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.44■□□□□ 0.38
CTCFP49711 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 IL9RP3-201ENST00000442856 1674 ntBASIC17.44■□□□□ 0.38
CTCFP49711 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 KRT8P14-201ENST00000414254 1442 ntBASIC17.44■□□□□ 0.38
CTCFP49711 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CTCFP49711 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.44■□□□□ 0.38
CTCFP49711 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.44■□□□□ 0.38
CTCFP49711 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CTCFP49711 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.43■□□□□ 0.38
CTCFP49711 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
CTCFP49711 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CTCFP49711 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CTCFP49711 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CTCFP49711 STK16-203ENST00000409516 895 ntTSL 2 BASIC17.43■□□□□ 0.38
CTCFP49711 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC17.43■□□□□ 0.38
CTCFP49711 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC17.43■□□□□ 0.38
CTCFP49711 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CTCFP49711 ELP5-212ENST00000574255 671 ntTSL 2 BASIC17.43■□□□□ 0.38
CTCFP49711 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC17.43■□□□□ 0.38
CTCFP49711 HPN-206ENST00000597419 1212 ntTSL 5 BASIC17.43■□□□□ 0.38
CTCFP49711 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CTCFP49711 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms