Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
BRCA1P38398 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.79■□□□□ 0.44
BRCA1P38398 OR51A9P-201ENST00000422578 911 ntBASIC17.79■□□□□ 0.44
BRCA1P38398 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
BRCA1P38398 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC17.79■□□□□ 0.44
BRCA1P38398 GOLGA2P7-209ENST00000560408 745 ntBASIC17.79■□□□□ 0.44
BRCA1P38398 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC17.79■□□□□ 0.44
BRCA1P38398 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRCA1P38398 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC17.79■□□□□ 0.44
BRCA1P38398 AC019109.1-201ENST00000401725 1874 ntBASIC17.79■□□□□ 0.44
BRCA1P38398 AC087481.3-201ENST00000602886 1894 ntBASIC17.79■□□□□ 0.44
BRCA1P38398 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRCA1P38398 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
BRCA1P38398 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
BRCA1P38398 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
BRCA1P38398 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
BRCA1P38398 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.79■□□□□ 0.44
BRCA1P38398 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
BRCA1P38398 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
BRCA1P38398 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC17.78■□□□□ 0.44
BRCA1P38398 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 MPI-203ENST00000535694 1523 ntTSL 2 BASIC17.78■□□□□ 0.44
BRCA1P38398 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
BRCA1P38398 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
BRCA1P38398 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 RNVU1-8-201ENST00000364272 125 ntBASIC17.78■□□□□ 0.44
BRCA1P38398 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.78■□□□□ 0.44
BRCA1P38398 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.78■□□□□ 0.44
BRCA1P38398 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC17.78■□□□□ 0.44
BRCA1P38398 NAV1-210ENST00000593583 726 ntBASIC17.78■□□□□ 0.44
BRCA1P38398 AP000769.1-203ENST00000637245 208 ntBASIC17.78■□□□□ 0.44
BRCA1P38398 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
BRCA1P38398 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.78■□□□□ 0.44
BRCA1P38398 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
BRCA1P38398 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
BRCA1P38398 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
BRCA1P38398 CICP13-201ENST00000422015 2789 ntBASIC17.78■□□□□ 0.44
BRCA1P38398 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.78■□□□□ 0.44
BRCA1P38398 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.78■□□□□ 0.44
BRCA1P38398 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.78■□□□□ 0.44
BRCA1P38398 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC17.78■□□□□ 0.44
BRCA1P38398 HNRNPA1P42-201ENST00000458678 957 ntBASIC17.78■□□□□ 0.44
BRCA1P38398 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC17.78■□□□□ 0.44
BRCA1P38398 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC17.78■□□□□ 0.44
BRCA1P38398 AC090386.2-201ENST00000623010 1039 ntBASIC17.78■□□□□ 0.44
BRCA1P38398 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
BRCA1P38398 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRCA1P38398 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.77■□□□□ 0.44
BRCA1P38398 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
BRCA1P38398 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRCA1P38398 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BRCA1P38398 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC17.77■□□□□ 0.44
BRCA1P38398 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BRCA1P38398 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.77■□□□□ 0.44
BRCA1P38398 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
BRCA1P38398 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRCA1P38398 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC17.77■□□□□ 0.44
BRCA1P38398 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRCA1P38398 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
BRCA1P38398 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.77■□□□□ 0.44
BRCA1P38398 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC17.77■□□□□ 0.44
BRCA1P38398 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
BRCA1P38398 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.77■□□□□ 0.44
BRCA1P38398 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.77■□□□□ 0.44
BRCA1P38398 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
BRCA1P38398 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.43
BRCA1P38398 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
BRCA1P38398 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
BRCA1P38398 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC17.77■□□□□ 0.43
BRCA1P38398 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC17.77■□□□□ 0.43
BRCA1P38398 AL160191.2-201ENST00000603975 601 ntBASIC17.77■□□□□ 0.43
BRCA1P38398 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.77■□□□□ 0.43
BRCA1P38398 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
BRCA1P38398 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
BRCA1P38398 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.77■□□□□ 0.43
BRCA1P38398 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
BRCA1P38398 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
BRCA1P38398 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.77■□□□□ 0.43
BRCA1P38398 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.77■□□□□ 0.43
BRCA1P38398 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
BRCA1P38398 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.76■□□□□ 0.43
BRCA1P38398 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
BRCA1P38398 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
BRCA1P38398 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
BRCA1P38398 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC17.76■□□□□ 0.43
BRCA1P38398 AC023141.7-201ENST00000430646 407 ntBASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms