Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.55□□□□□ -0.08
MSX2P35548 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 AC007787.1-201ENST00000588095 1583 ntBASIC14.55□□□□□ -0.08
MSX2P35548 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
MSX2P35548 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
MSX2P35548 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.55□□□□□ -0.08
MSX2P35548 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.54□□□□□ -0.08
MSX2P35548 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 AC093909.1-201ENST00000504731 1122 ntBASIC14.54□□□□□ -0.08
MSX2P35548 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.54□□□□□ -0.08
MSX2P35548 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC14.54□□□□□ -0.08
MSX2P35548 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC14.54□□□□□ -0.08
MSX2P35548 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
MSX2P35548 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC14.54□□□□□ -0.08
MSX2P35548 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC14.54□□□□□ -0.08
MSX2P35548 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
MSX2P35548 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 AC104109.2-201ENST00000602919 1418 ntBASIC14.54□□□□□ -0.08
MSX2P35548 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 AC012617.1-204ENST00000586340 2305 ntBASIC14.54□□□□□ -0.08
MSX2P35548 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
MSX2P35548 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
MSX2P35548 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.53□□□□□ -0.08
MSX2P35548 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
MSX2P35548 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
MSX2P35548 INVS-201ENST00000262456 2968 ntTSL 5 BASIC14.53□□□□□ -0.08
MSX2P35548 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
MSX2P35548 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.53□□□□□ -0.08
MSX2P35548 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.53□□□□□ -0.08
MSX2P35548 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.53□□□□□ -0.08
MSX2P35548 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 AC055811.4-201ENST00000624039 1754 ntBASIC14.53□□□□□ -0.08
MSX2P35548 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.53□□□□□ -0.08
MSX2P35548 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.53□□□□□ -0.08
MSX2P35548 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
MSX2P35548 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
MSX2P35548 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
MSX2P35548 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC14.53□□□□□ -0.08
MSX2P35548 SPCS2P4-201ENST00000436160 681 ntBASIC14.53□□□□□ -0.08
MSX2P35548 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.53□□□□□ -0.08
MSX2P35548 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
MSX2P35548 AC034105.1-201ENST00000563488 319 ntBASIC14.53□□□□□ -0.08
MSX2P35548 LINC01225-203ENST00000563550 1244 ntBASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms