Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC13.69□□□□□ -0.22
SPTA1P02549 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC13.69□□□□□ -0.22
SPTA1P02549 ACTBP7-201ENST00000418351 1124 ntBASIC13.69□□□□□ -0.22
SPTA1P02549 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC13.69□□□□□ -0.22
SPTA1P02549 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC13.69□□□□□ -0.22
SPTA1P02549 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC13.69□□□□□ -0.22
SPTA1P02549 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC13.69□□□□□ -0.22
SPTA1P02549 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SPTA1P02549 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SPTA1P02549 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SPTA1P02549 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SPTA1P02549 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SPTA1P02549 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SPTA1P02549 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SPTA1P02549 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.69□□□□□ -0.22
SPTA1P02549 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SPTA1P02549 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SPTA1P02549 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC13.69□□□□□ -0.22
SPTA1P02549 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
SPTA1P02549 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.69□□□□□ -0.22
SPTA1P02549 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SPTA1P02549 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
SPTA1P02549 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 RN7SKP175-201ENST00000408472 289 ntBASIC13.69□□□□□ -0.22
SPTA1P02549 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC13.69□□□□□ -0.22
SPTA1P02549 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC13.69□□□□□ -0.22
SPTA1P02549 BRI3P1-201ENST00000440440 378 ntBASIC13.69□□□□□ -0.22
SPTA1P02549 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC13.69□□□□□ -0.22
SPTA1P02549 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.69□□□□□ -0.22
SPTA1P02549 DUX4L46-201ENST00000566845 751 ntBASIC13.69□□□□□ -0.22
SPTA1P02549 SAMD11P1-201ENST00000571429 661 ntBASIC13.69□□□□□ -0.22
SPTA1P02549 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC13.69□□□□□ -0.22
SPTA1P02549 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.69□□□□□ -0.22
SPTA1P02549 MIR6816-201ENST00000620368 66 ntBASIC13.69□□□□□ -0.22
SPTA1P02549 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
SPTA1P02549 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
SPTA1P02549 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.68□□□□□ -0.22
SPTA1P02549 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC13.68□□□□□ -0.22
SPTA1P02549 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SPTA1P02549 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC13.68□□□□□ -0.22
SPTA1P02549 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 STK26-204ENST00000481105 1835 ntTSL 2 BASIC13.68□□□□□ -0.22
SPTA1P02549 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 AP000356.3-201ENST00000382243 753 ntBASIC13.68□□□□□ -0.22
SPTA1P02549 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC13.68□□□□□ -0.22
SPTA1P02549 VDAC1P1-201ENST00000439229 848 ntBASIC13.68□□□□□ -0.22
SPTA1P02549 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.68□□□□□ -0.22
SPTA1P02549 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC13.68□□□□□ -0.22
SPTA1P02549 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SPTA1P02549 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SPTA1P02549 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
SPTA1P02549 SP100-205ENST00000409824 1802 ntTSL 5 BASIC13.68□□□□□ -0.22
SPTA1P02549 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms