Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CISHQ9NSE2 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CISHQ9NSE2 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CISHQ9NSE2 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CISHQ9NSE2 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CISHQ9NSE2 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CISHQ9NSE2 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CISHQ9NSE2 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.17■□□□□ 0.18
CISHQ9NSE2 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.17■□□□□ 0.18
CISHQ9NSE2 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CISHQ9NSE2 CICP23-201ENST00000605013 2741 ntBASIC16.17■□□□□ 0.18
CISHQ9NSE2 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 LINC01101-201ENST00000622953 1884 ntBASIC16.16■□□□□ 0.18
CISHQ9NSE2 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 AC018665.1-201ENST00000622927 1362 ntBASIC16.16■□□□□ 0.18
CISHQ9NSE2 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 AC023824.1-201ENST00000562945 2975 ntBASIC16.16■□□□□ 0.18
CISHQ9NSE2 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 AC005034.1-201ENST00000426657 489 ntBASIC16.16■□□□□ 0.18
CISHQ9NSE2 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 AL022328.1-201ENST00000610050 478 ntBASIC16.16■□□□□ 0.18
CISHQ9NSE2 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CISHQ9NSE2 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.16■□□□□ 0.18
CISHQ9NSE2 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 AC004466.1-201ENST00000599515 1080 ntBASIC16.15■□□□□ 0.18
CISHQ9NSE2 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 AL035252.4-201ENST00000624174 288 ntBASIC16.15■□□□□ 0.18
CISHQ9NSE2 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.15■□□□□ 0.18
CISHQ9NSE2 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CISHQ9NSE2 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CISHQ9NSE2 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CISHQ9NSE2 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.14■□□□□ 0.17
CISHQ9NSE2 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CISHQ9NSE2 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC16.14■□□□□ 0.17
CISHQ9NSE2 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms