Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 AC084262.1-201ENST00000567818 751 ntBASIC14.6□□□□□ -0.07
VPS13AQ96RL7 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 PSME2-217ENST00000615264 874 ntTSL 5 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 PSME2-218ENST00000630027 185 ntTSL 3 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 AC092299.1-201ENST00000632679 757 ntBASIC14.6□□□□□ -0.07
VPS13AQ96RL7 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 MARK2P16-201ENST00000605714 1723 ntBASIC14.6□□□□□ -0.07
VPS13AQ96RL7 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 KRT18P36-201ENST00000411618 1276 ntBASIC14.6□□□□□ -0.07
VPS13AQ96RL7 AC023906.1-201ENST00000486386 453 ntBASIC14.6□□□□□ -0.07
VPS13AQ96RL7 AC142086.5-202ENST00000562500 217 ntBASIC14.6□□□□□ -0.07
VPS13AQ96RL7 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 NKILA-202ENST00000614771 2598 ntBASIC14.6□□□□□ -0.07
VPS13AQ96RL7 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
VPS13AQ96RL7 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 CDC23-208ENST00000505120 455 ntTSL 3 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 ABR-203ENST00000536794 2213 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 AC006483.2-201ENST00000609813 515 ntBASIC14.59□□□□□ -0.07
VPS13AQ96RL7 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 HELLS-212ENST00000630929 400 ntTSL 5 BASIC14.59□□□□□ -0.07
VPS13AQ96RL7 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
VPS13AQ96RL7 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.58□□□□□ -0.07
VPS13AQ96RL7 AC090616.6-203ENST00000579186 1945 ntBASIC14.58□□□□□ -0.07
VPS13AQ96RL7 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.58□□□□□ -0.07
VPS13AQ96RL7 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
VPS13AQ96RL7 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
VPS13AQ96RL7 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms