Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AL358472.5-202ENST00000641448 1267 ntBASIC14.65□□□□□ -0.06
VMP1Q96GC9 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
VMP1Q96GC9 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VMP1Q96GC9 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VMP1Q96GC9 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VMP1Q96GC9 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VMP1Q96GC9 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
VMP1Q96GC9 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC14.65□□□□□ -0.06
VMP1Q96GC9 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
VMP1Q96GC9 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.65□□□□□ -0.06
VMP1Q96GC9 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
VMP1Q96GC9 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.65□□□□□ -0.06
VMP1Q96GC9 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VMP1Q96GC9 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
VMP1Q96GC9 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VMP1Q96GC9 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VMP1Q96GC9 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
VMP1Q96GC9 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
VMP1Q96GC9 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VMP1Q96GC9 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
VMP1Q96GC9 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC14.65□□□□□ -0.06
VMP1Q96GC9 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
VMP1Q96GC9 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.65□□□□□ -0.06
VMP1Q96GC9 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC14.65□□□□□ -0.06
VMP1Q96GC9 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
VMP1Q96GC9 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
VMP1Q96GC9 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 TP53TG3HP-202ENST00000569755 579 ntBASIC14.64□□□□□ -0.07
VMP1Q96GC9 AC036164.1-201ENST00000570544 333 ntBASIC14.64□□□□□ -0.07
VMP1Q96GC9 MIR4313-201ENST00000580760 101 ntBASIC14.64□□□□□ -0.07
VMP1Q96GC9 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 AL158212.4-201ENST00000624062 1286 ntBASIC14.64□□□□□ -0.07
VMP1Q96GC9 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.64□□□□□ -0.07
VMP1Q96GC9 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
VMP1Q96GC9 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 AC138969.3-201ENST00000546612 1459 ntBASIC14.63□□□□□ -0.07
VMP1Q96GC9 AC138932.2-201ENST00000548268 1459 ntBASIC14.63□□□□□ -0.07
VMP1Q96GC9 AC126755.4-201ENST00000549796 1459 ntBASIC14.63□□□□□ -0.07
VMP1Q96GC9 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 KRT18P64-201ENST00000434946 1219 ntBASIC14.63□□□□□ -0.07
VMP1Q96GC9 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 AC093726.1-201ENST00000608064 963 ntBASIC14.63□□□□□ -0.07
VMP1Q96GC9 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
VMP1Q96GC9 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
VMP1Q96GC9 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms