Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
HMGB4Q8WW32 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 CYP2T1P-202ENST00000641596 2535 ntBASIC15.18■□□□□ 0.02
HMGB4Q8WW32 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 AL008707.1-201ENST00000422498 534 ntBASIC15.18■□□□□ 0.02
HMGB4Q8WW32 AC011742.3-201ENST00000439053 820 ntBASIC15.18■□□□□ 0.02
HMGB4Q8WW32 OARD1-204ENST00000464633 717 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 AC022217.1-201ENST00000521069 738 ntBASIC15.18■□□□□ 0.02
HMGB4Q8WW32 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 DUX4L47-201ENST00000566374 394 ntBASIC15.18■□□□□ 0.02
HMGB4Q8WW32 AL136301.1-201ENST00000615830 422 ntBASIC15.18■□□□□ 0.02
HMGB4Q8WW32 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.18■□□□□ 0.02
HMGB4Q8WW32 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
HMGB4Q8WW32 TUBBP5-203ENST00000508529 1334 ntBASIC15.17■□□□□ 0.02
HMGB4Q8WW32 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 MST1L-201ENST00000442552 2185 ntBASIC15.17■□□□□ 0.02
HMGB4Q8WW32 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 HLA-DQB2-229ENST00000411527 1059 ntBASIC15.17■□□□□ 0.02
HMGB4Q8WW32 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 FGFR3P5-201ENST00000564496 886 ntBASIC15.17■□□□□ 0.02
HMGB4Q8WW32 RN7SL774P-201ENST00000577467 290 ntBASIC15.17■□□□□ 0.02
HMGB4Q8WW32 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 AC022748.3-201ENST00000621828 275 ntBASIC15.17■□□□□ 0.02
HMGB4Q8WW32 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HMGB4Q8WW32 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 CICP11-201ENST00000434745 2827 ntBASIC15.16■□□□□ 0.02
HMGB4Q8WW32 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
HMGB4Q8WW32 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms