Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
NKX2-3Q8TAU0 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 OR6D1P-202ENST00000641007 5290 ntBASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 RPS2P36-201ENST00000456516 831 ntBASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 AP006547.1-201ENST00000563435 692 ntBASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 CLUHP2-201ENST00000426660 1303 ntBASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
NKX2-3Q8TAU0 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 LINC02228-204ENST00000642115 2962 ntBASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 AL391280.1-201ENST00000506969 1062 ntBASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 MIR3619-201ENST00000579667 83 ntBASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 SPCS2P2-201ENST00000603270 608 ntBASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 AC009093.2-202ENST00000620513 2079 ntBASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 AC128714.1-201ENST00000637035 887 ntBASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 AC018529.2-202ENST00000611482 3087 ntBASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
NKX2-3Q8TAU0 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
NKX2-3Q8TAU0 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms