Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 FAM86MP-201ENST00000340703 885 ntBASIC14.15□□□□□ -0.14
BEST3Q8N1M1 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 AC004066.1-201ENST00000502488 802 ntBASIC14.15□□□□□ -0.14
BEST3Q8N1M1 RNA5SP412-201ENST00000516234 123 ntBASIC14.15□□□□□ -0.14
BEST3Q8N1M1 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.15□□□□□ -0.14
BEST3Q8N1M1 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
BEST3Q8N1M1 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 MYO15B-237ENST00000642007 4893 ntBASIC14.14□□□□□ -0.15
BEST3Q8N1M1 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 ACTBP8-201ENST00000403258 1108 ntBASIC14.14□□□□□ -0.15
BEST3Q8N1M1 NUS1P3-201ENST00000423502 862 ntBASIC14.14□□□□□ -0.15
BEST3Q8N1M1 FAM197Y7-201ENST00000432892 766 ntBASIC14.14□□□□□ -0.15
BEST3Q8N1M1 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 YBX1P6-201ENST00000442962 1002 ntBASIC14.14□□□□□ -0.15
BEST3Q8N1M1 AC114812.1-204ENST00000449669 728 ntBASIC14.14□□□□□ -0.15
BEST3Q8N1M1 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 AC138951.2-201ENST00000623455 1161 ntBASIC14.14□□□□□ -0.15
BEST3Q8N1M1 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
BEST3Q8N1M1 AL138709.1-201ENST00000614840 1693 ntBASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms