Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 AC003102.2-201ENST00000589195 1469 ntBASIC12.3□□□□□ -0.44
VPS13CQ709C8 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 AGK-211ENST00000629555 2765 ntTSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 AC092638.2-201ENST00000441105 947 ntBASIC12.29□□□□□ -0.44
VPS13CQ709C8 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 FTH1P22-201ENST00000456305 520 ntBASIC12.29□□□□□ -0.44
VPS13CQ709C8 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 AC093826.1-201ENST00000508655 993 ntBASIC12.29□□□□□ -0.44
VPS13CQ709C8 MT3-203ENST00000565838 421 ntTSL 3 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 LINC01783-202ENST00000614408 828 ntBASIC12.29□□□□□ -0.44
VPS13CQ709C8 BX284668.2-205ENST00000619677 828 ntBASIC12.29□□□□□ -0.44
VPS13CQ709C8 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 LINC01101-201ENST00000622953 1884 ntBASIC12.29□□□□□ -0.44
VPS13CQ709C8 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 TMBIM7P-202ENST00000641474 1516 ntBASIC12.29□□□□□ -0.44
VPS13CQ709C8 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
VPS13CQ709C8 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 BUD31-205ENST00000456893 512 ntTSL 5 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 AC026470.1-201ENST00000478038 846 ntBASIC12.29□□□□□ -0.44
VPS13CQ709C8 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 AC007952.4-201ENST00000573866 637 ntBASIC12.29□□□□□ -0.44
VPS13CQ709C8 AC140113.1-201ENST00000603467 169 ntBASIC12.29□□□□□ -0.44
VPS13CQ709C8 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC12.29□□□□□ -0.44
VPS13CQ709C8 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 AL583805.1-201ENST00000391389 531 ntBASIC12.28□□□□□ -0.44
VPS13CQ709C8 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 AL365203.3-201ENST00000609742 2057 ntBASIC12.28□□□□□ -0.44
VPS13CQ709C8 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 DBET-201ENST00000630918 3363 ntBASIC12.28□□□□□ -0.44
VPS13CQ709C8 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC12.28□□□□□ -0.44
VPS13CQ709C8 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
VPS13CQ709C8 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms