Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 NAA40-205ENST00000539656 577 ntTSL 4 BASIC10.55□□□□□ -0.72
PRKDCP78527 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
PRKDCP78527 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC10.55□□□□□ -0.72
PRKDCP78527 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC10.55□□□□□ -0.72
PRKDCP78527 AL590440.2-201ENST00000641973 1595 ntBASIC10.55□□□□□ -0.72
PRKDCP78527 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC10.55□□□□□ -0.72
PRKDCP78527 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC10.55□□□□□ -0.72
PRKDCP78527 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC10.55□□□□□ -0.72
PRKDCP78527 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC10.55□□□□□ -0.72
PRKDCP78527 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC10.55□□□□□ -0.72
PRKDCP78527 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC10.55□□□□□ -0.72
PRKDCP78527 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC10.55□□□□□ -0.72
PRKDCP78527 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC10.55□□□□□ -0.72
PRKDCP78527 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 CICP12-201ENST00000455801 843 ntBASIC10.55□□□□□ -0.72
PRKDCP78527 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC10.55□□□□□ -0.72
PRKDCP78527 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC10.55□□□□□ -0.72
PRKDCP78527 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC10.55□□□□□ -0.72
PRKDCP78527 ABCC6P1-203ENST00000565566 1170 ntBASIC10.55□□□□□ -0.72
PRKDCP78527 OR3A1-202ENST00000615105 966 ntBASIC10.55□□□□□ -0.72
PRKDCP78527 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
PRKDCP78527 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.72
PRKDCP78527 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 MSANTD2P1-201ENST00000445341 1368 ntBASIC10.54□□□□□ -0.72
PRKDCP78527 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC10.54□□□□□ -0.72
PRKDCP78527 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC10.54□□□□□ -0.72
PRKDCP78527 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC10.54□□□□□ -0.72
PRKDCP78527 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC10.54□□□□□ -0.72
PRKDCP78527 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 OR8T1P-201ENST00000421347 918 ntBASIC10.54□□□□□ -0.72
PRKDCP78527 AC092910.2-201ENST00000491262 348 ntBASIC10.54□□□□□ -0.72
PRKDCP78527 AC004923.3-201ENST00000527532 355 ntBASIC10.54□□□□□ -0.72
PRKDCP78527 MST1L-204ENST00000545160 559 ntTSL 4 BASIC10.54□□□□□ -0.72
PRKDCP78527 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 AC079328.2-201ENST00000561241 3354 ntBASIC10.54□□□□□ -0.72
PRKDCP78527 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC10.54□□□□□ -0.72
PRKDCP78527 AL591122.2-201ENST00000624125 1853 ntBASIC10.54□□□□□ -0.72
PRKDCP78527 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC10.54□□□□□ -0.72
PRKDCP78527 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC10.54□□□□□ -0.72
PRKDCP78527 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC10.54□□□□□ -0.72
PRKDCP78527 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC10.54□□□□□ -0.72
PRKDCP78527 AC011431.1-201ENST00000512971 230 ntBASIC10.54□□□□□ -0.72
PRKDCP78527 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC10.54□□□□□ -0.72
PRKDCP78527 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC10.54□□□□□ -0.72
PRKDCP78527 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC10.54□□□□□ -0.72
PRKDCP78527 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC10.54□□□□□ -0.72
PRKDCP78527 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC10.54□□□□□ -0.72
PRKDCP78527 RN7SL440P-201ENST00000577855 343 ntBASIC10.54□□□□□ -0.72
PRKDCP78527 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC10.54□□□□□ -0.72
PRKDCP78527 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC10.54□□□□□ -0.72
PRKDCP78527 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC10.54□□□□□ -0.72
PRKDCP78527 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
PRKDCP78527 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC10.53□□□□□ -0.72
PRKDCP78527 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC10.53□□□□□ -0.72
PRKDCP78527 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC10.53□□□□□ -0.72
PRKDCP78527 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC10.53□□□□□ -0.72
PRKDCP78527 U73169.1-201ENST00000395152 367 ntBASIC10.53□□□□□ -0.72
PRKDCP78527 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC10.53□□□□□ -0.72
PRKDCP78527 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC10.53□□□□□ -0.72
PRKDCP78527 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC10.53□□□□□ -0.72
PRKDCP78527 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC10.53□□□□□ -0.72
PRKDCP78527 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC10.53□□□□□ -0.72
PRKDCP78527 AC079414.2-201ENST00000567157 1104 ntBASIC10.53□□□□□ -0.72
PRKDCP78527 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC10.53□□□□□ -0.72
PRKDCP78527 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
PRKDCP78527 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC10.53□□□□□ -0.72
PRKDCP78527 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC10.53□□□□□ -0.72
PRKDCP78527 AP003680.1-201ENST00000598970 3660 ntBASIC10.53□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms