Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SOX3P41225 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX3P41225 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
SOX3P41225 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX3P41225 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX3P41225 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SOX3P41225 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX3P41225 VDAC1P7-201ENST00000462417 847 ntBASIC14.37□□□□□ -0.11
SOX3P41225 RPL13AP25-201ENST00000484130 612 ntBASIC14.37□□□□□ -0.11
SOX3P41225 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.37□□□□□ -0.11
SOX3P41225 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX3P41225 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.37□□□□□ -0.11
SOX3P41225 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX3P41225 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX3P41225 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.37□□□□□ -0.11
SOX3P41225 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.37□□□□□ -0.11
SOX3P41225 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.37□□□□□ -0.11
SOX3P41225 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX3P41225 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.37□□□□□ -0.11
SOX3P41225 AC133539.2-201ENST00000604757 467 ntBASIC14.37□□□□□ -0.11
SOX3P41225 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SOX3P41225 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX3P41225 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX3P41225 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SOX3P41225 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 INTS4P2-202ENST00000614726 2019 ntBASIC14.37□□□□□ -0.11
SOX3P41225 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX3P41225 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX3P41225 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.37□□□□□ -0.11
SOX3P41225 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SOX3P41225 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC14.37□□□□□ -0.11
SOX3P41225 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.37□□□□□ -0.11
SOX3P41225 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
SOX3P41225 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SOX3P41225 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.36□□□□□ -0.11
SOX3P41225 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.36□□□□□ -0.11
SOX3P41225 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SOX3P41225 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.36□□□□□ -0.11
SOX3P41225 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SOX3P41225 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SOX3P41225 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.36□□□□□ -0.11
SOX3P41225 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
SOX3P41225 AC134915.1-201ENST00000426461 574 ntBASIC14.36□□□□□ -0.11
SOX3P41225 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
SOX3P41225 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.36□□□□□ -0.11
SOX3P41225 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.36□□□□□ -0.11
SOX3P41225 GIMAP3P-201ENST00000495150 836 ntBASIC14.36□□□□□ -0.11
SOX3P41225 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.36□□□□□ -0.11
SOX3P41225 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.36□□□□□ -0.11
SOX3P41225 AL359711.2-201ENST00000563105 872 ntBASIC14.36□□□□□ -0.11
SOX3P41225 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.36□□□□□ -0.11
SOX3P41225 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.36□□□□□ -0.11
SOX3P41225 MYO15B-237ENST00000642007 4893 ntBASIC14.36□□□□□ -0.11
SOX3P41225 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SOX3P41225 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SOX3P41225 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SOX3P41225 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SOX3P41225 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.35□□□□□ -0.11
SOX3P41225 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SOX3P41225 GRK6P1-201ENST00000400595 1711 ntBASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms