Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
MSX1P28360 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.96□□□□□ -0.18
MSX1P28360 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
MSX1P28360 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
MSX1P28360 AL133338.1-201ENST00000565695 1517 ntBASIC13.95□□□□□ -0.18
MSX1P28360 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
MSX1P28360 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
MSX1P28360 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 AL158070.2-201ENST00000623713 1621 ntBASIC13.95□□□□□ -0.18
MSX1P28360 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC13.95□□□□□ -0.18
MSX1P28360 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.95□□□□□ -0.18
MSX1P28360 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
MSX1P28360 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.95□□□□□ -0.18
MSX1P28360 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.95□□□□□ -0.18
MSX1P28360 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 ACTG1P3-201ENST00000431775 1114 ntBASIC13.95□□□□□ -0.18
MSX1P28360 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.95□□□□□ -0.18
MSX1P28360 AC245100.3-201ENST00000441281 285 ntBASIC13.95□□□□□ -0.18
MSX1P28360 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.95□□□□□ -0.18
MSX1P28360 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
MSX1P28360 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
MSX1P28360 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC13.95□□□□□ -0.18
MSX1P28360 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC13.95□□□□□ -0.18
MSX1P28360 MIR4538-201ENST00000581377 78 ntBASIC13.95□□□□□ -0.18
MSX1P28360 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
MSX1P28360 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 REXO1L4P-201ENST00000605109 1937 ntBASIC13.95□□□□□ -0.18
MSX1P28360 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC13.95□□□□□ -0.18
MSX1P28360 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
MSX1P28360 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.95□□□□□ -0.18
MSX1P28360 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
MSX1P28360 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
MSX1P28360 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.94□□□□□ -0.18
MSX1P28360 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.94□□□□□ -0.18
MSX1P28360 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
MSX1P28360 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 AL360270.3-201ENST00000609118 1348 ntBASIC13.94□□□□□ -0.18
MSX1P28360 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
MSX1P28360 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
MSX1P28360 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.94□□□□□ -0.18
MSX1P28360 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
MSX1P28360 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 RPS15-201ENST00000233609 534 ntTSL 2 BASIC13.94□□□□□ -0.18
MSX1P28360 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
MSX1P28360 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 APOC3-202ENST00000375345 604 ntTSL 5 BASIC13.94□□□□□ -0.18
MSX1P28360 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.94□□□□□ -0.18
MSX1P28360 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.94□□□□□ -0.18
MSX1P28360 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
MSX1P28360 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
MSX1P28360 KRT18P25-201ENST00000508931 1278 ntBASIC13.94□□□□□ -0.18
MSX1P28360 TDH-203ENST00000531764 1110 ntBASIC13.94□□□□□ -0.18
MSX1P28360 AL583810.1-201ENST00000553344 1045 ntBASIC13.94□□□□□ -0.18
MSX1P28360 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.94□□□□□ -0.18
MSX1P28360 USP3-AS1-204ENST00000559861 620 ntTSL 5 BASIC13.94□□□□□ -0.18
MSX1P28360 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.94□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms