Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL158070.2-201ENST00000623713 1621 ntBASIC15.17■□□□□ 0.02
MSH3P20585 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
MSH3P20585 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
MSH3P20585 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.16■□□□□ 0.02
MSH3P20585 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
MSH3P20585 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.16■□□□□ 0.02
MSH3P20585 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.16■□□□□ 0.02
MSH3P20585 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.16■□□□□ 0.02
MSH3P20585 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
MSH3P20585 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
MSH3P20585 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.16■□□□□ 0.02
MSH3P20585 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
MSH3P20585 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.16■□□□□ 0.02
MSH3P20585 NME2P1-201ENST00000426182 414 ntBASIC15.16■□□□□ 0.02
MSH3P20585 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.16■□□□□ 0.02
MSH3P20585 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC15.16■□□□□ 0.02
MSH3P20585 RN7SL837P-201ENST00000463010 287 ntBASIC15.16■□□□□ 0.02
MSH3P20585 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.16■□□□□ 0.02
MSH3P20585 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
MSH3P20585 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC15.16■□□□□ 0.02
MSH3P20585 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.16■□□□□ 0.02
MSH3P20585 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.16■□□□□ 0.02
MSH3P20585 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
MSH3P20585 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
MSH3P20585 AC010319.3-201ENST00000597028 470 ntBASIC15.16■□□□□ 0.02
MSH3P20585 AC012645.4-201ENST00000610691 1061 ntBASIC15.16■□□□□ 0.02
MSH3P20585 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.16■□□□□ 0.02
MSH3P20585 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
MSH3P20585 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC15.16■□□□□ 0.02
MSH3P20585 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.16■□□□□ 0.02
MSH3P20585 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 AC091951.1-201ENST00000512854 2465 ntBASIC15.16■□□□□ 0.02
MSH3P20585 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
MSH3P20585 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
MSH3P20585 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
MSH3P20585 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 MROH4P-201ENST00000431302 1578 ntBASIC15.15■□□□□ 0.02
MSH3P20585 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
MSH3P20585 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.15■□□□□ 0.02
MSH3P20585 REXO1L4P-201ENST00000605109 1937 ntBASIC15.15■□□□□ 0.02
MSH3P20585 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
MSH3P20585 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.15■□□□□ 0.02
MSH3P20585 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.15■□□□□ 0.02
MSH3P20585 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC15.15■□□□□ 0.02
MSH3P20585 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
MSH3P20585 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.15■□□□□ 0.02
MSH3P20585 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.15■□□□□ 0.02
MSH3P20585 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.15■□□□□ 0.02
MSH3P20585 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.15■□□□□ 0.02
MSH3P20585 AL512384.1-201ENST00000406683 331 ntBASIC15.15■□□□□ 0.02
MSH3P20585 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.15■□□□□ 0.02
MSH3P20585 COX5BP8-201ENST00000416911 349 ntBASIC15.15■□□□□ 0.02
MSH3P20585 AC007389.4-201ENST00000454674 793 ntBASIC15.15■□□□□ 0.02
MSH3P20585 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.15■□□□□ 0.02
MSH3P20585 TDH-203ENST00000531764 1110 ntBASIC15.15■□□□□ 0.02
MSH3P20585 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.15■□□□□ 0.02
MSH3P20585 CLUHP6-201ENST00000580789 941 ntBASIC15.15■□□□□ 0.02
MSH3P20585 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.15■□□□□ 0.02
MSH3P20585 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms