Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 KNOP1P1-201ENST00000542108 989 ntBASIC15.28■□□□□ 0.04
VCANP13611 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.28■□□□□ 0.04
VCANP13611 DBET-201ENST00000630918 3363 ntBASIC15.28■□□□□ 0.04
VCANP13611 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.28■□□□□ 0.04
VCANP13611 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC15.28■□□□□ 0.04
VCANP13611 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 RNF170-202ENST00000319073 1265 ntTSL 2 BASIC15.28■□□□□ 0.04
VCANP13611 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC15.28■□□□□ 0.04
VCANP13611 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.28■□□□□ 0.04
VCANP13611 RN7SL582P-201ENST00000491078 279 ntBASIC15.28■□□□□ 0.04
VCANP13611 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC15.28■□□□□ 0.04
VCANP13611 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC15.28■□□□□ 0.04
VCANP13611 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.28■□□□□ 0.04
VCANP13611 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC15.28■□□□□ 0.04
VCANP13611 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
VCANP13611 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC15.28■□□□□ 0.04
VCANP13611 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC15.28■□□□□ 0.04
VCANP13611 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VCANP13611 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.27■□□□□ 0.04
VCANP13611 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VCANP13611 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
VCANP13611 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VCANP13611 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC15.27■□□□□ 0.04
VCANP13611 AC006122.1-201ENST00000493323 440 ntBASIC15.27■□□□□ 0.04
VCANP13611 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC15.27■□□□□ 0.04
VCANP13611 PRMT1P1-201ENST00000604252 1009 ntBASIC15.27■□□□□ 0.04
VCANP13611 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC15.27■□□□□ 0.04
VCANP13611 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC15.27■□□□□ 0.04
VCANP13611 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VCANP13611 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VCANP13611 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.27■□□□□ 0.04
VCANP13611 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VCANP13611 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VCANP13611 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VCANP13611 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
VCANP13611 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
VCANP13611 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
VCANP13611 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VCANP13611 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VCANP13611 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VCANP13611 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
VCANP13611 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.27■□□□□ 0.04
VCANP13611 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.27■□□□□ 0.04
VCANP13611 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
VCANP13611 AC136604.1-202ENST00000425471 771 ntBASIC15.27■□□□□ 0.04
VCANP13611 AC013553.1-201ENST00000560906 267 ntBASIC15.27■□□□□ 0.04
VCANP13611 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
VCANP13611 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC15.27■□□□□ 0.04
VCANP13611 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VCANP13611 ME2P1-201ENST00000426028 1970 ntBASIC15.27■□□□□ 0.03
VCANP13611 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VCANP13611 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.27■□□□□ 0.03
VCANP13611 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VCANP13611 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VCANP13611 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VCANP13611 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.03
VCANP13611 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
VCANP13611 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
VCANP13611 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VCANP13611 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VCANP13611 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC15.27■□□□□ 0.03
VCANP13611 AC022616.1-201ENST00000518688 554 ntBASIC15.27■□□□□ 0.03
VCANP13611 AC138701.2-201ENST00000553634 226 ntBASIC15.27■□□□□ 0.03
VCANP13611 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC15.27■□□□□ 0.03
VCANP13611 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VCANP13611 AC010976.2-201ENST00000609697 852 ntBASIC15.27■□□□□ 0.03
VCANP13611 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
VCANP13611 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VCANP13611 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.26■□□□□ 0.03
VCANP13611 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.26■□□□□ 0.03
VCANP13611 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 CDCA4P4-201ENST00000435216 680 ntBASIC15.26■□□□□ 0.03
VCANP13611 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC15.26■□□□□ 0.03
VCANP13611 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
VCANP13611 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VCANP13611 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms