Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC18.11■□□□□ 0.49
COL4A1P02462 AC103691.2-201ENST00000618824 433 ntBASIC18.11■□□□□ 0.49
COL4A1P02462 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC18.11■□□□□ 0.49
COL4A1P02462 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC18.11■□□□□ 0.49
COL4A1P02462 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC18.11■□□□□ 0.49
COL4A1P02462 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.11■□□□□ 0.49
COL4A1P02462 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL4A1P02462 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
COL4A1P02462 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A1P02462 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A1P02462 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 HNRNPA1P27-201ENST00000412087 955 ntBASIC18.1■□□□□ 0.49
COL4A1P02462 NAGK-204ENST00000443872 878 ntTSL 3 BASIC18.1■□□□□ 0.49
COL4A1P02462 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC18.1■□□□□ 0.49
COL4A1P02462 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC18.1■□□□□ 0.49
COL4A1P02462 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
COL4A1P02462 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
COL4A1P02462 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A1P02462 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A1P02462 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC18.1■□□□□ 0.49
COL4A1P02462 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
COL4A1P02462 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC18.09■□□□□ 0.49
COL4A1P02462 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC18.09■□□□□ 0.49
COL4A1P02462 AC003686.1-201ENST00000550956 1034 ntBASIC18.09■□□□□ 0.49
COL4A1P02462 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A1P02462 AC005041.3-201ENST00000606287 649 ntBASIC18.09■□□□□ 0.49
COL4A1P02462 WT1-AS_6.1-201ENST00000614919 121 ntBASIC18.09■□□□□ 0.49
COL4A1P02462 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
COL4A1P02462 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A1P02462 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A1P02462 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A1P02462 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A1P02462 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A1P02462 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A1P02462 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A1P02462 KRT8P31-201ENST00000504812 1408 ntBASIC18.09■□□□□ 0.49
COL4A1P02462 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
COL4A1P02462 AC008741.2-201ENST00000612792 3115 ntBASIC18.09■□□□□ 0.49
COL4A1P02462 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A1P02462 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A1P02462 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
COL4A1P02462 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
COL4A1P02462 AL512430.1-201ENST00000392575 860 ntBASIC18.09■□□□□ 0.49
COL4A1P02462 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A1P02462 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC18.09■□□□□ 0.49
COL4A1P02462 MRPL22P1-201ENST00000505398 616 ntBASIC18.09■□□□□ 0.49
COL4A1P02462 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC18.09■□□□□ 0.49
COL4A1P02462 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC18.09■□□□□ 0.49
COL4A1P02462 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A1P02462 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A1P02462 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A1P02462 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A1P02462 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
COL4A1P02462 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A1P02462 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A1P02462 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A1P02462 AC073347.1-201ENST00000421633 2643 ntBASIC18.08■□□□□ 0.49
COL4A1P02462 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A1P02462 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A1P02462 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A1P02462 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC18.08■□□□□ 0.49
COL4A1P02462 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A1P02462 AC105917.1-201ENST00000506637 2539 ntBASIC18.08■□□□□ 0.48
COL4A1P02462 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A1P02462 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A1P02462 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms