Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
SEMA3DO95025 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SEMA3DO95025 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SEMA3DO95025 AL138799.1-201ENST00000448213 1675 ntBASIC14.62□□□□□ -0.07
SEMA3DO95025 AC097376.2-205ENST00000610159 5334 ntBASIC14.62□□□□□ -0.07
SEMA3DO95025 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.62□□□□□ -0.07
SEMA3DO95025 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 AL442647.2-201ENST00000429864 857 ntBASIC14.62□□□□□ -0.07
SEMA3DO95025 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.62□□□□□ -0.07
SEMA3DO95025 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 GNAQP1-201ENST00000444815 1067 ntBASIC14.62□□□□□ -0.07
SEMA3DO95025 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.62□□□□□ -0.07
SEMA3DO95025 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 UGT1A2P-201ENST00000454886 866 ntBASIC14.62□□□□□ -0.07
SEMA3DO95025 VDAC1P7-201ENST00000462417 847 ntBASIC14.62□□□□□ -0.07
SEMA3DO95025 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.62□□□□□ -0.07
SEMA3DO95025 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.62□□□□□ -0.07
SEMA3DO95025 AC104596.2-201ENST00000512793 793 ntBASIC14.62□□□□□ -0.07
SEMA3DO95025 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.62□□□□□ -0.07
SEMA3DO95025 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.62□□□□□ -0.07
SEMA3DO95025 AC093726.1-201ENST00000608064 963 ntBASIC14.62□□□□□ -0.07
SEMA3DO95025 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
SEMA3DO95025 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
SEMA3DO95025 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SEMA3DO95025 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.62□□□□□ -0.07
SEMA3DO95025 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.62□□□□□ -0.07
SEMA3DO95025 AL360270.3-201ENST00000609118 1348 ntBASIC14.62□□□□□ -0.07
SEMA3DO95025 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.62□□□□□ -0.07
SEMA3DO95025 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
SEMA3DO95025 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
SEMA3DO95025 AJ011931.1-201ENST00000618749 2492 ntBASIC14.61□□□□□ -0.07
SEMA3DO95025 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 INTS4P2-202ENST00000614726 2019 ntBASIC14.61□□□□□ -0.07
SEMA3DO95025 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.61□□□□□ -0.07
SEMA3DO95025 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
SEMA3DO95025 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
SEMA3DO95025 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SEMA3DO95025 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SEMA3DO95025 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.61□□□□□ -0.07
SEMA3DO95025 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
SEMA3DO95025 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.61□□□□□ -0.07
SEMA3DO95025 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
SEMA3DO95025 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.61□□□□□ -0.07
SEMA3DO95025 NUS1P3-201ENST00000423502 862 ntBASIC14.61□□□□□ -0.07
SEMA3DO95025 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SEMA3DO95025 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms