Protein–RNA interactions for Protein: O43707

ACTN4, Alpha-actinin-4, humanhuman

Known RBP Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4O43707 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.04■□□□□ 0.32
ACTN4O43707 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ACTN4O43707 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.04■□□□□ 0.32
ACTN4O43707 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ACTN4O43707 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ACTN4O43707 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC17.04■□□□□ 0.32
ACTN4O43707 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
ACTN4O43707 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC17.04■□□□□ 0.32
ACTN4O43707 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ACTN4O43707 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ACTN4O43707 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC17.04■□□□□ 0.32
ACTN4O43707 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ACTN4O43707 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
ACTN4O43707 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ACTN4O43707 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ACTN4O43707 MX1-218ENST00000619682 1980 ntTSL 5 BASIC17.04■□□□□ 0.32
ACTN4O43707 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ACTN4O43707 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
ACTN4O43707 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 AC018665.1-201ENST00000622927 1362 ntBASIC17.03■□□□□ 0.32
ACTN4O43707 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
ACTN4O43707 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 INTS4P1-203ENST00000641008 3683 ntBASIC17.03■□□□□ 0.32
ACTN4O43707 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
ACTN4O43707 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
ACTN4O43707 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC17.03■□□□□ 0.32
ACTN4O43707 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC17.03■□□□□ 0.32
ACTN4O43707 AC092183.1-201ENST00000469884 875 ntBASIC17.03■□□□□ 0.32
ACTN4O43707 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.03■□□□□ 0.32
ACTN4O43707 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
ACTN4O43707 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.03■□□□□ 0.32
ACTN4O43707 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.03■□□□□ 0.32
ACTN4O43707 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.03■□□□□ 0.32
ACTN4O43707 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.03■□□□□ 0.32
ACTN4O43707 AC093813.1-201ENST00000605066 256 ntBASIC17.03■□□□□ 0.32
ACTN4O43707 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC17.03■□□□□ 0.32
ACTN4O43707 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.03■□□□□ 0.32
ACTN4O43707 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
ACTN4O43707 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC17.03■□□□□ 0.32
ACTN4O43707 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC17.03■□□□□ 0.32
ACTN4O43707 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC17.03■□□□□ 0.32
ACTN4O43707 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
ACTN4O43707 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
ACTN4O43707 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
ACTN4O43707 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ACTN4O43707 INTS4P2-202ENST00000614726 2019 ntBASIC17.03■□□□□ 0.32
ACTN4O43707 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.02■□□□□ 0.32
ACTN4O43707 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
ACTN4O43707 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
ACTN4O43707 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
ACTN4O43707 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC17.02■□□□□ 0.32
ACTN4O43707 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.02■□□□□ 0.32
ACTN4O43707 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ACTN4O43707 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
ACTN4O43707 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.02■□□□□ 0.32
ACTN4O43707 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms