Protein–RNA interactions for Protein: Q9NUP9

LIN7C, Protein lin-7 homolog C, humanhuman

Known RBP Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN7CQ9NUP9 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
LIN7CQ9NUP9 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 RDX-218ENST00000544551 4117 ntTSL 2 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 CENPM-205ENST00000404067 905 ntTSL 3 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 RPL37AP1-201ENST00000412502 279 ntBASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 NME4-207ENST00000450036 985 ntTSL 3 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 RN7SL618P-201ENST00000477850 296 ntBASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 RNA5SP421-201ENST00000516864 134 ntBASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 AL390754.1-201ENST00000619088 582 ntBASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC12.71□□□□□ -0.37
LIN7CQ9NUP9 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 AC012508.2-201ENST00000567613 1472 ntBASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 AC100757.3-201ENST00000622361 1406 ntBASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
LIN7CQ9NUP9 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 AC087499.5-201ENST00000452760 1342 ntBASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 UCKL1-AS1-201ENST00000623569 3602 ntBASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 MIR770-201ENST00000390219 98 ntBASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 HNRNPA3P1-201ENST00000401429 1139 ntBASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 HNRNPA3P5-201ENST00000455201 833 ntBASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 AL512638.1-201ENST00000457493 794 ntBASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 AC093214.1-201ENST00000511688 1107 ntBASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 SLED1-202ENST00000512051 380 ntBASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 DUT-210ENST00000559935 569 ntTSL 3 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 SERF2-217ENST00000630046 862 ntTSL 5 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC12.7□□□□□ -0.38
LIN7CQ9NUP9 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms