Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CHMP4AQ9BY43 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 ZBED1P1-201ENST00000502364 1930 ntBASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 AC079178.1-201ENST00000420915 656 ntBASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CHMP4AQ9BY43 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 FKBP4P6-201ENST00000457486 1332 ntBASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 AC007969.1-201ENST00000433675 447 ntBASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 NCK2-206ENST00000522586 490 ntTSL 5 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 RN7SL560P-201ENST00000577943 264 ntBASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 EEF1DP1-201ENST00000585891 896 ntBASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 AC008825.2-201ENST00000603374 718 ntBASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 AC244157.2-201ENST00000616239 1006 ntBASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 PCDHGB8P-201ENST00000502926 1973 ntBASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CHMP4AQ9BY43 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP4AQ9BY43 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms