Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
IFT140Q96RY7 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 KNOP1P1-201ENST00000542108 989 ntBASIC24.27■■□□□ 1.48
IFT140Q96RY7 PMEL-214ENST00000550447 901 ntTSL 3 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 KRT8P2-201ENST00000556193 944 ntBASIC24.27■■□□□ 1.48
IFT140Q96RY7 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
IFT140Q96RY7 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
IFT140Q96RY7 AL133467.4-201ENST00000602953 725 ntBASIC24.27■■□□□ 1.48
IFT140Q96RY7 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
IFT140Q96RY7 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
IFT140Q96RY7 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
IFT140Q96RY7 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
IFT140Q96RY7 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
IFT140Q96RY7 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
IFT140Q96RY7 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
IFT140Q96RY7 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
IFT140Q96RY7 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC24.27■■□□□ 1.48
IFT140Q96RY7 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 PFN2-212ENST00000490975 858 ntTSL 4 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 AC008026.2-201ENST00000495438 348 ntBASIC24.26■■□□□ 1.47
IFT140Q96RY7 AC090136.2-201ENST00000517809 420 ntBASIC24.26■■□□□ 1.47
IFT140Q96RY7 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 GCK-209ENST00000616242 2260 ntTSL 5 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 AL603832.2-201ENST00000566195 2125 ntBASIC24.26■■□□□ 1.47
IFT140Q96RY7 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 NHP2P1-201ENST00000335274 462 ntBASIC24.26■■□□□ 1.47
IFT140Q96RY7 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
IFT140Q96RY7 GAS5-209ENST00000430245 723 ntTSL 3 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 RN7SL767P-201ENST00000493013 295 ntBASIC24.26■■□□□ 1.47
IFT140Q96RY7 BCRP4-201ENST00000506079 804 ntBASIC24.26■■□□□ 1.47
IFT140Q96RY7 CASP3-205ENST00000517513 964 ntTSL 5 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC24.26■■□□□ 1.47
IFT140Q96RY7 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC24.25■■□□□ 1.47
IFT140Q96RY7 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
IFT140Q96RY7 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC24.25■■□□□ 1.47
IFT140Q96RY7 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
IFT140Q96RY7 BRD7P5-201ENST00000299197 1822 ntBASIC24.25■■□□□ 1.47
IFT140Q96RY7 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
IFT140Q96RY7 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
IFT140Q96RY7 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
IFT140Q96RY7 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
IFT140Q96RY7 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
IFT140Q96RY7 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
IFT140Q96RY7 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
IFT140Q96RY7 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC24.25■■□□□ 1.47
IFT140Q96RY7 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC24.25■■□□□ 1.47
IFT140Q96RY7 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
IFT140Q96RY7 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC24.25■■□□□ 1.47
IFT140Q96RY7 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC24.25■■□□□ 1.47
IFT140Q96RY7 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC24.25■■□□□ 1.47
IFT140Q96RY7 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC24.25■■□□□ 1.47
IFT140Q96RY7 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC24.25■■□□□ 1.47
IFT140Q96RY7 FRMD6-AS1-201ENST00000617151 2229 ntBASIC24.25■■□□□ 1.47
IFT140Q96RY7 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC24.25■■□□□ 1.47
IFT140Q96RY7 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC24.25■■□□□ 1.47
IFT140Q96RY7 AC092364.2-201ENST00000596710 2692 ntBASIC24.24■■□□□ 1.47
IFT140Q96RY7 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
IFT140Q96RY7 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
IFT140Q96RY7 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
IFT140Q96RY7 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
IFT140Q96RY7 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms