Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC18.71■□□□□ 0.59
SYNE4Q8N205 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE4Q8N205 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE4Q8N205 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE4Q8N205 UFM1-202ENST00000379649 846 ntTSL 4 BASIC18.71■□□□□ 0.59
SYNE4Q8N205 AK6-201ENST00000380818 1183 ntTSL 2 BASIC18.71■□□□□ 0.59
SYNE4Q8N205 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC18.71■□□□□ 0.59
SYNE4Q8N205 SLC16A6P1-201ENST00000413214 1059 ntBASIC18.71■□□□□ 0.59
SYNE4Q8N205 AC008267.1-201ENST00000474858 1069 ntBASIC18.71■□□□□ 0.59
SYNE4Q8N205 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC18.71■□□□□ 0.59
SYNE4Q8N205 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC18.71■□□□□ 0.59
SYNE4Q8N205 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC18.71■□□□□ 0.59
SYNE4Q8N205 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC18.71■□□□□ 0.59
SYNE4Q8N205 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE4Q8N205 RN7SL163P-201ENST00000583100 276 ntBASIC18.71■□□□□ 0.59
SYNE4Q8N205 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC18.71■□□□□ 0.59
SYNE4Q8N205 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC18.71■□□□□ 0.59
SYNE4Q8N205 AC100757.4-201ENST00000626934 759 ntBASIC18.71■□□□□ 0.59
SYNE4Q8N205 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE4Q8N205 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE4Q8N205 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.71■□□□□ 0.59
SYNE4Q8N205 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC18.71■□□□□ 0.59
SYNE4Q8N205 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE4Q8N205 AC006480.2-201ENST00000609770 1337 ntBASIC18.71■□□□□ 0.59
SYNE4Q8N205 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE4Q8N205 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SYNE4Q8N205 AC003102.2-201ENST00000589195 1469 ntBASIC18.71■□□□□ 0.59
SYNE4Q8N205 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SYNE4Q8N205 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 AC244394.1-201ENST00000435000 1665 ntBASIC18.7■□□□□ 0.58
SYNE4Q8N205 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 AC069218.1-201ENST00000435269 762 ntBASIC18.7■□□□□ 0.58
SYNE4Q8N205 AC011742.3-201ENST00000439053 820 ntBASIC18.7■□□□□ 0.58
SYNE4Q8N205 AL596276.2-201ENST00000447525 331 ntBASIC18.7■□□□□ 0.58
SYNE4Q8N205 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 AC018635.2-201ENST00000608625 364 ntBASIC18.7■□□□□ 0.58
SYNE4Q8N205 AC090164.2-201ENST00000611487 516 ntBASIC18.7■□□□□ 0.58
SYNE4Q8N205 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SYNE4Q8N205 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC18.7■□□□□ 0.58
SYNE4Q8N205 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE4Q8N205 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE4Q8N205 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE4Q8N205 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE4Q8N205 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 AC007274.2-201ENST00000421675 662 ntBASIC18.69■□□□□ 0.58
SYNE4Q8N205 VDAC1P1-201ENST00000439229 848 ntBASIC18.69■□□□□ 0.58
SYNE4Q8N205 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 HNRNPA1P36-201ENST00000521313 955 ntBASIC18.69■□□□□ 0.58
SYNE4Q8N205 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 SNORD3B-2-202ENST00000571722 791 ntBASIC18.69■□□□□ 0.58
SYNE4Q8N205 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE4Q8N205 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE4Q8N205 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SYNE4Q8N205 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE4Q8N205 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE4Q8N205 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE4Q8N205 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SYNE4Q8N205 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms