Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 GSN-203ENST00000373808 2664 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 AC106881.1-201ENST00000605849 3329 ntBASIC18.37■□□□□ 0.53
VPS53Q5VIR6 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 REXO1L5P-201ENST00000622260 2098 ntBASIC18.37■□□□□ 0.53
VPS53Q5VIR6 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18.37■□□□□ 0.53
VPS53Q5VIR6 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 AL162726.2-201ENST00000438986 1017 ntBASIC18.36■□□□□ 0.53
VPS53Q5VIR6 ZBTB45P1-201ENST00000452761 1456 ntBASIC18.36■□□□□ 0.53
VPS53Q5VIR6 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 CU639417.3-201ENST00000624240 1404 ntBASIC18.36■□□□□ 0.53
VPS53Q5VIR6 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
VPS53Q5VIR6 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 ACE3P-201ENST00000423435 1973 ntBASIC18.35■□□□□ 0.53
VPS53Q5VIR6 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
VPS53Q5VIR6 AL365209.1-201ENST00000624418 6473 ntBASIC18.35■□□□□ 0.53
VPS53Q5VIR6 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms