Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CMC4P56277 AP001889.1-201ENST00000525414 633 ntBASIC11.32□□□□□ -0.6
CMC4P56277 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC11.32□□□□□ -0.6
CMC4P56277 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC11.32□□□□□ -0.6
CMC4P56277 AC132938.2-201ENST00000579188 680 ntBASIC11.32□□□□□ -0.6
CMC4P56277 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC11.32□□□□□ -0.6
CMC4P56277 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
CMC4P56277 LARP4-220ENST00000615080 856 ntTSL 5 BASIC11.32□□□□□ -0.6
CMC4P56277 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
CMC4P56277 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC11.32□□□□□ -0.6
CMC4P56277 AL591163.1-201ENST00000641757 987 ntBASIC11.32□□□□□ -0.6
CMC4P56277 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CMC4P56277 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
CMC4P56277 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
CMC4P56277 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
CMC4P56277 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CMC4P56277 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CMC4P56277 CICP6-201ENST00000457191 2729 ntBASIC11.32□□□□□ -0.6
CMC4P56277 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC11.32□□□□□ -0.6
CMC4P56277 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CMC4P56277 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CMC4P56277 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CMC4P56277 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CMC4P56277 AL162727.3-201ENST00000635661 2787 ntBASIC11.32□□□□□ -0.6
CMC4P56277 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CMC4P56277 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CMC4P56277 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
CMC4P56277 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
CMC4P56277 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC11.32□□□□□ -0.6
CMC4P56277 CICP11-201ENST00000434745 2827 ntBASIC11.31□□□□□ -0.6
CMC4P56277 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 CASK-202ENST00000378158 3848 ntTSL 5 BASIC11.31□□□□□ -0.6
CMC4P56277 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
CMC4P56277 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 LILRP1-201ENST00000444199 1370 ntBASIC11.31□□□□□ -0.6
CMC4P56277 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
CMC4P56277 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 AGK-211ENST00000629555 2765 ntTSL 5 BASIC11.31□□□□□ -0.6
CMC4P56277 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC11.31□□□□□ -0.6
CMC4P56277 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
CMC4P56277 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
CMC4P56277 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC11.31□□□□□ -0.6
CMC4P56277 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC11.31□□□□□ -0.6
CMC4P56277 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC11.31□□□□□ -0.6
CMC4P56277 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 RAB43P1-201ENST00000561790 589 ntBASIC11.31□□□□□ -0.6
CMC4P56277 AL109954.1-202ENST00000564051 2148 ntBASIC11.31□□□□□ -0.6
CMC4P56277 DUX4L47-201ENST00000566374 394 ntBASIC11.31□□□□□ -0.6
CMC4P56277 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 AC239800.4-201ENST00000603712 296 ntBASIC11.31□□□□□ -0.6
CMC4P56277 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 AC145423.3-201ENST00000615987 467 ntBASIC11.31□□□□□ -0.6
CMC4P56277 FOS-202ENST00000535987 1402 ntTSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
CMC4P56277 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
CMC4P56277 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC11.31□□□□□ -0.6
CMC4P56277 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
CMC4P56277 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 TP73-213ENST00000604479 1623 ntTSL 5 BASIC11.31□□□□□ -0.6
CMC4P56277 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 REXO1L4P-201ENST00000605109 1937 ntBASIC11.31□□□□□ -0.6
CMC4P56277 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC11.31□□□□□ -0.6
CMC4P56277 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CMC4P56277 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms