Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 MTHFR-210ENST00000641407 2387 ntBASIC15□□□□□ -0.01
PKNOX1P55347 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15□□□□□ -0.01
PKNOX1P55347 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15□□□□□ -0.01
PKNOX1P55347 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PKNOX1P55347 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PKNOX1P55347 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 OS9-207ENST00000439210 1946 ntTSL 2 BASIC15□□□□□ -0.01
PKNOX1P55347 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15□□□□□ -0.01
PKNOX1P55347 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
PKNOX1P55347 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC15□□□□□ -0.01
PKNOX1P55347 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
PKNOX1P55347 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
PKNOX1P55347 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PKNOX1P55347 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PKNOX1P55347 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.99□□□□□ -0.01
PKNOX1P55347 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.99□□□□□ -0.01
PKNOX1P55347 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.99□□□□□ -0.01
PKNOX1P55347 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.99□□□□□ -0.01
PKNOX1P55347 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.99□□□□□ -0.01
PKNOX1P55347 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.99□□□□□ -0.01
PKNOX1P55347 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
PKNOX1P55347 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PKNOX1P55347 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
PKNOX1P55347 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
PKNOX1P55347 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
PKNOX1P55347 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
PKNOX1P55347 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC14.99□□□□□ -0.01
PKNOX1P55347 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.99□□□□□ -0.01
PKNOX1P55347 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC14.99□□□□□ -0.01
PKNOX1P55347 SDHAP3-202ENST00000515467 728 ntBASIC14.99□□□□□ -0.01
PKNOX1P55347 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.99□□□□□ -0.01
PKNOX1P55347 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PKNOX1P55347 AL512361.1-201ENST00000554200 418 ntBASIC14.99□□□□□ -0.01
PKNOX1P55347 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.99□□□□□ -0.01
PKNOX1P55347 SNHG9-202ENST00000564014 471 ntBASIC14.99□□□□□ -0.01
PKNOX1P55347 AC010336.2-201ENST00000564226 506 ntBASIC14.99□□□□□ -0.01
PKNOX1P55347 AC051619.7-201ENST00000568314 623 ntBASIC14.99□□□□□ -0.01
PKNOX1P55347 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.99□□□□□ -0.01
PKNOX1P55347 AC027612.4-201ENST00000605371 583 ntBASIC14.99□□□□□ -0.01
PKNOX1P55347 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
PKNOX1P55347 SPDYE12P-201ENST00000618416 771 ntBASIC14.99□□□□□ -0.01
PKNOX1P55347 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.99□□□□□ -0.01
PKNOX1P55347 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.99□□□□□ -0.01
PKNOX1P55347 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
PKNOX1P55347 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PKNOX1P55347 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
PKNOX1P55347 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.98□□□□□ -0.01
PKNOX1P55347 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.98□□□□□ -0.01
PKNOX1P55347 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 REXO1L4P-201ENST00000605109 1937 ntBASIC14.98□□□□□ -0.01
PKNOX1P55347 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.98□□□□□ -0.01
PKNOX1P55347 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.98□□□□□ -0.01
PKNOX1P55347 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.98□□□□□ -0.01
PKNOX1P55347 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PKNOX1P55347 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.98□□□□□ -0.01
PKNOX1P55347 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
PKNOX1P55347 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.98□□□□□ -0.01
PKNOX1P55347 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms