Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
FOXA1P55317 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 AC093525.8-201ENST00000624099 1342 ntBASIC14.73□□□□□ -0.05
FOXA1P55317 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.73□□□□□ -0.05
FOXA1P55317 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.73□□□□□ -0.05
FOXA1P55317 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
FOXA1P55317 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
FOXA1P55317 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.73□□□□□ -0.05
FOXA1P55317 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.73□□□□□ -0.05
FOXA1P55317 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.73□□□□□ -0.05
FOXA1P55317 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.73□□□□□ -0.05
FOXA1P55317 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.73□□□□□ -0.05
FOXA1P55317 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 IGHV3-42-201ENST00000520410 361 ntBASIC14.73□□□□□ -0.05
FOXA1P55317 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.73□□□□□ -0.05
FOXA1P55317 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.73□□□□□ -0.05
FOXA1P55317 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.73□□□□□ -0.05
FOXA1P55317 SRD5A3P1-201ENST00000603021 949 ntBASIC14.73□□□□□ -0.05
FOXA1P55317 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.73□□□□□ -0.05
FOXA1P55317 AC079781.4-201ENST00000641908 219 ntBASIC14.73□□□□□ -0.05
FOXA1P55317 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.73□□□□□ -0.05
FOXA1P55317 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
FOXA1P55317 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.73□□□□□ -0.05
FOXA1P55317 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
FOXA1P55317 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 DRD5P1-201ENST00000456605 1438 ntBASIC14.73□□□□□ -0.05
FOXA1P55317 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.73□□□□□ -0.05
FOXA1P55317 AL158070.2-201ENST00000623713 1621 ntBASIC14.73□□□□□ -0.05
FOXA1P55317 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC14.73□□□□□ -0.05
FOXA1P55317 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
FOXA1P55317 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
FOXA1P55317 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.73□□□□□ -0.05
FOXA1P55317 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
FOXA1P55317 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA1P55317 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
FOXA1P55317 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
FOXA1P55317 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 BTBD7P1-201ENST00000447253 1453 ntBASIC14.72□□□□□ -0.05
FOXA1P55317 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
FOXA1P55317 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.72□□□□□ -0.05
FOXA1P55317 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.72□□□□□ -0.05
FOXA1P55317 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA1P55317 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
FOXA1P55317 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.72□□□□□ -0.05
FOXA1P55317 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.72□□□□□ -0.05
FOXA1P55317 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.72□□□□□ -0.05
FOXA1P55317 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
FOXA1P55317 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC14.72□□□□□ -0.05
FOXA1P55317 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.72□□□□□ -0.05
FOXA1P55317 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA1P55317 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA1P55317 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
FOXA1P55317 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC14.72□□□□□ -0.05
FOXA1P55317 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
FOXA1P55317 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.72□□□□□ -0.05
FOXA1P55317 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
FOXA1P55317 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.71□□□□□ -0.05
FOXA1P55317 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.71□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms