Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 ACE3P-201ENST00000423435 1973 ntBASIC15.5■□□□□ 0.07
CDH4P55283 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
CDH4P55283 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.5■□□□□ 0.07
CDH4P55283 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 HLA-V-201ENST00000429037 534 ntBASIC15.5■□□□□ 0.07
CDH4P55283 AC026954.1-201ENST00000429771 1293 ntBASIC15.5■□□□□ 0.07
CDH4P55283 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.5■□□□□ 0.07
CDH4P55283 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 MESTP3-201ENST00000503460 968 ntBASIC15.5■□□□□ 0.07
CDH4P55283 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.5■□□□□ 0.07
CDH4P55283 AC023310.1-201ENST00000554836 735 ntBASIC15.5■□□□□ 0.07
CDH4P55283 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.5■□□□□ 0.07
CDH4P55283 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
CDH4P55283 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
CDH4P55283 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
CDH4P55283 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CDH4P55283 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC15.5■□□□□ 0.07
CDH4P55283 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH4P55283 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH4P55283 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 AC046158.3-201ENST00000624947 2558 ntBASIC15.49■□□□□ 0.07
CDH4P55283 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 CLUHP2-201ENST00000426660 1303 ntBASIC15.49■□□□□ 0.07
CDH4P55283 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 AL354989.2-201ENST00000435838 1540 ntBASIC15.49■□□□□ 0.07
CDH4P55283 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.49■□□□□ 0.07
CDH4P55283 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH4P55283 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH4P55283 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH4P55283 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC15.49■□□□□ 0.07
CDH4P55283 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH4P55283 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH4P55283 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC15.49■□□□□ 0.07
CDH4P55283 MIR6752-201ENST00000618442 71 ntBASIC15.49■□□□□ 0.07
CDH4P55283 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH4P55283 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
CDH4P55283 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CDH4P55283 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
CDH4P55283 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CDH4P55283 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
CDH4P55283 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH4P55283 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
CDH4P55283 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC15.49■□□□□ 0.07
CDH4P55283 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.49■□□□□ 0.07
CDH4P55283 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CDH4P55283 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
CDH4P55283 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.48■□□□□ 0.07
CDH4P55283 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH4P55283 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH4P55283 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
CDH4P55283 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH4P55283 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH4P55283 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH4P55283 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH4P55283 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH4P55283 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDH4P55283 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH4P55283 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms