Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC24.7■■□□□ 1.54
CUX1P39880 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC24.7■■□□□ 1.54
CUX1P39880 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC24.7■■□□□ 1.54
CUX1P39880 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CUX1P39880 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC24.7■■□□□ 1.54
CUX1P39880 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
CUX1P39880 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX1P39880 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX1P39880 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC24.69■■□□□ 1.54
CUX1P39880 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX1P39880 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC24.69■■□□□ 1.54
CUX1P39880 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX1P39880 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC24.69■■□□□ 1.54
CUX1P39880 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX1P39880 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX1P39880 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CUX1P39880 STK16-203ENST00000409516 895 ntTSL 2 BASIC24.69■■□□□ 1.54
CUX1P39880 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC24.69■■□□□ 1.54
CUX1P39880 AC092580.1-201ENST00000433998 658 ntBASIC24.69■■□□□ 1.54
CUX1P39880 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX1P39880 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
CUX1P39880 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC24.69■■□□□ 1.54
CUX1P39880 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
CUX1P39880 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX1P39880 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC24.68■■□□□ 1.54
CUX1P39880 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX1P39880 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC24.68■■□□□ 1.54
CUX1P39880 SSR4P1-203ENST00000599569 2260 ntBASIC24.68■■□□□ 1.54
CUX1P39880 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC24.68■■□□□ 1.54
CUX1P39880 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX1P39880 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX1P39880 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC24.68■■□□□ 1.54
CUX1P39880 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX1P39880 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX1P39880 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC24.68■■□□□ 1.54
CUX1P39880 C2orf69P1-201ENST00000563532 1093 ntBASIC24.68■■□□□ 1.54
CUX1P39880 MIR2392-201ENST00000584881 84 ntBASIC24.68■■□□□ 1.54
CUX1P39880 AC006158.1-201ENST00000610661 249 ntBASIC24.68■■□□□ 1.54
CUX1P39880 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC24.68■■□□□ 1.54
CUX1P39880 USP4-203ENST00000415188 1454 ntTSL 3 BASIC24.68■■□□□ 1.54
CUX1P39880 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC24.68■■□□□ 1.54
CUX1P39880 LINC01101-201ENST00000622953 1884 ntBASIC24.68■■□□□ 1.54
CUX1P39880 AC026691.1-201ENST00000602502 2017 ntBASIC24.68■■□□□ 1.54
CUX1P39880 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX1P39880 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC24.68■■□□□ 1.54
CUX1P39880 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
CUX1P39880 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC24.68■■□□□ 1.54
CUX1P39880 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC24.67■■□□□ 1.54
CUX1P39880 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUX1P39880 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUX1P39880 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
CUX1P39880 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC24.67■■□□□ 1.54
CUX1P39880 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CUX1P39880 Z69890.1-201ENST00000382990 339 ntBASIC24.67■■□□□ 1.54
CUX1P39880 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC24.67■■□□□ 1.54
CUX1P39880 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC24.67■■□□□ 1.54
CUX1P39880 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC24.67■■□□□ 1.54
CUX1P39880 LINC00431-202ENST00000636375 159 ntBASIC24.67■■□□□ 1.54
CUX1P39880 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUX1P39880 PRORSD1P-202ENST00000563365 2154 ntBASIC24.67■■□□□ 1.54
CUX1P39880 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUX1P39880 KHSRPP1-201ENST00000427983 1768 ntBASIC24.67■■□□□ 1.54
CUX1P39880 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC24.67■■□□□ 1.54
CUX1P39880 AP002353.1-201ENST00000528257 1599 ntBASIC24.67■■□□□ 1.54
CUX1P39880 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC24.67■■□□□ 1.54
CUX1P39880 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC24.67■■□□□ 1.54
CUX1P39880 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
CUX1P39880 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
CUX1P39880 API5-203ENST00000455725 2257 ntTSL 2 BASIC24.67■■□□□ 1.54
CUX1P39880 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC24.66■■□□□ 1.54
CUX1P39880 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CUX1P39880 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC24.66■■□□□ 1.54
CUX1P39880 PSMD4P1-201ENST00000433951 1109 ntBASIC24.66■■□□□ 1.54
CUX1P39880 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC24.66■■□□□ 1.54
CUX1P39880 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC24.66■■□□□ 1.54
CUX1P39880 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC24.66■■□□□ 1.54
CUX1P39880 AC244250.3-201ENST00000620749 366 ntBASIC24.66■■□□□ 1.54
CUX1P39880 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CUX1P39880 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CUX1P39880 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CUX1P39880 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CUX1P39880 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CUX1P39880 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
CUX1P39880 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CUX1P39880 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
CUX1P39880 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC24.66■■□□□ 1.54
CUX1P39880 OR8T1P-201ENST00000421347 918 ntBASIC24.66■■□□□ 1.54
CUX1P39880 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC24.66■■□□□ 1.54
CUX1P39880 DPY19L2P5-201ENST00000456300 331 ntBASIC24.66■■□□□ 1.54
CUX1P39880 RN7SL470P-201ENST00000583069 259 ntBASIC24.66■■□□□ 1.54
CUX1P39880 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC24.66■■□□□ 1.54
CUX1P39880 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC24.66■■□□□ 1.54
CUX1P39880 PCDHGB8P-201ENST00000502926 1973 ntBASIC24.66■■□□□ 1.54
CUX1P39880 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC24.65■■□□□ 1.54
CUX1P39880 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC24.65■■□□□ 1.54
CUX1P39880 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC24.65■■□□□ 1.54
CUX1P39880 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
CUX1P39880 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC24.65■■□□□ 1.54
CUX1P39880 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms