Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC099548.2-209ENST00000480264 625 ntBASIC12.96□□□□□ -0.33
USF1P22415 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC12.96□□□□□ -0.33
USF1P22415 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC12.96□□□□□ -0.33
USF1P22415 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC12.96□□□□□ -0.33
USF1P22415 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
USF1P22415 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC12.96□□□□□ -0.33
USF1P22415 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC12.96□□□□□ -0.33
USF1P22415 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
USF1P22415 AC084346.2-201ENST00000607097 949 ntBASIC12.96□□□□□ -0.33
USF1P22415 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.96□□□□□ -0.33
USF1P22415 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
USF1P22415 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC12.96□□□□□ -0.33
USF1P22415 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC12.96□□□□□ -0.33
USF1P22415 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12.96□□□□□ -0.33
USF1P22415 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
USF1P22415 FES-204ENST00000414248 2327 ntTSL 2 BASIC12.96□□□□□ -0.34
USF1P22415 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
USF1P22415 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
USF1P22415 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
USF1P22415 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
USF1P22415 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC12.96□□□□□ -0.34
USF1P22415 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC12.96□□□□□ -0.34
USF1P22415 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.34
USF1P22415 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
USF1P22415 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
USF1P22415 TP73-209ENST00000603362 1668 ntTSL 5 BASIC12.96□□□□□ -0.34
USF1P22415 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
USF1P22415 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
USF1P22415 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.34
USF1P22415 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
USF1P22415 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC12.95□□□□□ -0.34
USF1P22415 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
USF1P22415 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
USF1P22415 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 PCDHA3-202ENST00000532566 4594 ntBASIC12.95□□□□□ -0.34
USF1P22415 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
USF1P22415 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC12.95□□□□□ -0.34
USF1P22415 TPO-206ENST00000382269 1155 ntTSL 5 BASIC12.95□□□□□ -0.34
USF1P22415 CNN2P8-201ENST00000421872 913 ntBASIC12.95□□□□□ -0.34
USF1P22415 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 AC025279.2-201ENST00000569730 653 ntBASIC12.95□□□□□ -0.34
USF1P22415 AC015910.1-201ENST00000579400 975 ntBASIC12.95□□□□□ -0.34
USF1P22415 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC12.95□□□□□ -0.34
USF1P22415 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC12.95□□□□□ -0.34
USF1P22415 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC12.95□□□□□ -0.34
USF1P22415 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.95□□□□□ -0.34
USF1P22415 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC12.95□□□□□ -0.34
USF1P22415 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
USF1P22415 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC12.95□□□□□ -0.34
USF1P22415 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC12.95□□□□□ -0.34
USF1P22415 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
USF1P22415 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
USF1P22415 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC12.95□□□□□ -0.34
USF1P22415 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
USF1P22415 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
USF1P22415 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
USF1P22415 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC12.95□□□□□ -0.34
USF1P22415 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC12.94□□□□□ -0.34
USF1P22415 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
USF1P22415 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC12.94□□□□□ -0.34
USF1P22415 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC12.94□□□□□ -0.34
USF1P22415 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC12.94□□□□□ -0.34
USF1P22415 AC022532.1-201ENST00000624563 1728 ntBASIC12.94□□□□□ -0.34
USF1P22415 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
USF1P22415 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC12.94□□□□□ -0.34
USF1P22415 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC12.94□□□□□ -0.34
USF1P22415 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
USF1P22415 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms