Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 LINC02199-201ENST00000506655 2702 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 AL138725.1-201ENST00000407347 1314 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 RNA5SP359-201ENST00000364838 113 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 GEMIN8P4-201ENST00000380526 729 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 OR51A9P-201ENST00000422578 911 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 AC006328.1-201ENST00000437571 379 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 PEBP1P3-201ENST00000455475 548 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 PFN2-212ENST00000490975 858 ntTSL 4 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 IGHEP2-201ENST00000519308 1256 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 F11R-204ENST00000537746 1245 ntTSL 2 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 AC106886.4-201ENST00000623557 2502 ntBASIC11.5□□□□□ -0.57
COL6A5A8TX70 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
COL6A5A8TX70 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
COL6A5A8TX70 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 CA12-203ENST00000422263 2556 ntTSL 2 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 OR10N1P-201ENST00000392758 869 ntBASIC11.49□□□□□ -0.57
COL6A5A8TX70 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 KRT18P46-201ENST00000435568 1279 ntBASIC11.49□□□□□ -0.57
COL6A5A8TX70 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 COQ4-204ENST00000608951 781 ntTSL 2 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 EML3-212ENST00000494176 2901 ntTSL 2 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 EML3-216ENST00000529309 2909 ntTSL 2 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 ING5-213ENST00000636051 4199 ntTSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 FLII-221ENST00000578558 2377 ntTSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 ERP29P1-201ENST00000442902 706 ntBASIC11.49□□□□□ -0.57
COL6A5A8TX70 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 CDK4P1-201ENST00000454213 828 ntBASIC11.49□□□□□ -0.57
COL6A5A8TX70 AC078814.4-201ENST00000546650 327 ntBASIC11.49□□□□□ -0.57
COL6A5A8TX70 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
COL6A5A8TX70 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
COL6A5A8TX70 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 AL137783.1-201ENST00000623494 1896 ntBASIC11.48□□□□□ -0.57
COL6A5A8TX70 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
COL6A5A8TX70 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC11.48□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms