Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 RPL5P21-201ENST00000404620 815 ntBASIC14.84□□□□□ -0.03
VPS4AQ9UN37 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 RN7SL837P-201ENST00000463010 287 ntBASIC14.84□□□□□ -0.03
VPS4AQ9UN37 ZNF890P-202ENST00000530367 1156 ntBASIC14.84□□□□□ -0.03
VPS4AQ9UN37 AC092552.1-201ENST00000547243 906 ntBASIC14.84□□□□□ -0.03
VPS4AQ9UN37 AL079307.3-201ENST00000556114 283 ntBASIC14.84□□□□□ -0.03
VPS4AQ9UN37 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 AL033527.4-201ENST00000641026 673 ntBASIC14.84□□□□□ -0.03
VPS4AQ9UN37 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 FAM45BP-202ENST00000592932 1624 ntBASIC14.84□□□□□ -0.03
VPS4AQ9UN37 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 AC023908.3-201ENST00000564211 3047 ntBASIC14.84□□□□□ -0.03
VPS4AQ9UN37 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
VPS4AQ9UN37 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
VPS4AQ9UN37 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
VPS4AQ9UN37 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
VPS4AQ9UN37 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
VPS4AQ9UN37 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
VPS4AQ9UN37 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
VPS4AQ9UN37 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.83□□□□□ -0.03
VPS4AQ9UN37 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.83□□□□□ -0.03
VPS4AQ9UN37 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 LINC00528-201ENST00000600723 2160 ntBASIC14.83□□□□□ -0.04
VPS4AQ9UN37 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 AC139749.1-202ENST00000617529 3139 ntBASIC14.83□□□□□ -0.04
VPS4AQ9UN37 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 COX11-210ENST00000639671 696 ntBASIC14.83□□□□□ -0.04
VPS4AQ9UN37 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 SLC7A15P-201ENST00000424028 1363 ntBASIC14.83□□□□□ -0.04
VPS4AQ9UN37 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
VPS4AQ9UN37 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms