Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC13.52□□□□□ -0.24
CLCF1Q9UBD9 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 FAM86HP-204ENST00000513466 959 ntBASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 RN7SL219P-201ENST00000582872 296 ntBASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 TMBIM7P-203ENST00000641617 1718 ntBASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 MST1L-201ENST00000442552 2185 ntBASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 AC007950.2-201ENST00000615045 2347 ntBASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
CLCF1Q9UBD9 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 AC112693.3-201ENST00000624819 1983 ntBASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 KRT8P44-201ENST00000441609 1350 ntBASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 CNN2P10-201ENST00000443067 918 ntBASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 PACS1-203ENST00000524815 628 ntTSL 4 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 C2orf69P2-201ENST00000562032 1123 ntBASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 MIR4525-201ENST00000580000 75 ntBASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 MIR4538-201ENST00000581377 78 ntBASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CLCF1Q9UBD9 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms