Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 AC089987.1-201ENST00000551654 2209 ntBASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 KRT18P3-201ENST00000451602 1288 ntBASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 AL133215.2-201ENST00000609242 977 ntBASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CCDC28BQ9BUN5 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 ZNF259P1-201ENST00000407656 1365 ntBASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 AC015909.5-201ENST00000624336 2266 ntBASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 ACTG1P14-201ENST00000446382 1122 ntBASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 AC018529.1-201ENST00000613063 361 ntBASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 FAM197Y3-203ENST00000618346 717 ntBASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CCDC28BQ9BUN5 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 AC009078.2-202ENST00000463353 338 ntBASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 AC140113.2-201ENST00000604370 208 ntBASIC14.85□□□□□ -0.03
CCDC28BQ9BUN5 AC027601.4-201ENST00000611259 610 ntBASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms