Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 SUOX-214ENST00000551841 906 ntTSL 3 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 BX640514.1-201ENST00000583223 1918 ntBASIC13.38□□□□□ -0.27
NKX3-1Q99801 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
NKX3-1Q99801 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.38□□□□□ -0.27
NKX3-1Q99801 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 PON3-203ENST00000427422 894 ntTSL 3 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 AC027796.2-201ENST00000575326 344 ntBASIC13.37□□□□□ -0.27
NKX3-1Q99801 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 AC018529.1-201ENST00000613063 361 ntBASIC13.37□□□□□ -0.27
NKX3-1Q99801 AC106028.4-201ENST00000614509 607 ntBASIC13.37□□□□□ -0.27
NKX3-1Q99801 AC105339.1-204ENST00000636249 355 ntBASIC13.37□□□□□ -0.27
NKX3-1Q99801 AC084121.4-201ENST00000641598 221 ntBASIC13.37□□□□□ -0.27
NKX3-1Q99801 AF228730.8-201ENST00000642140 221 ntBASIC13.37□□□□□ -0.27
NKX3-1Q99801 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
NKX3-1Q99801 MFF-204ENST00000353339 2186 ntTSL 5 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
NKX3-1Q99801 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 WASH3P-207ENST00000560956 1394 ntBASIC13.36□□□□□ -0.27
NKX3-1Q99801 FO538757.1-201ENST00000623083 1397 ntBASIC13.36□□□□□ -0.27
NKX3-1Q99801 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
NKX3-1Q99801 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
NKX3-1Q99801 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms