Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
ERCC4Q92889 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC17.34■□□□□ 0.37
ERCC4Q92889 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC17.34■□□□□ 0.37
ERCC4Q92889 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
ERCC4Q92889 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.34■□□□□ 0.37
ERCC4Q92889 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.34■□□□□ 0.37
ERCC4Q92889 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC17.34■□□□□ 0.37
ERCC4Q92889 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.34■□□□□ 0.37
ERCC4Q92889 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17.34■□□□□ 0.37
ERCC4Q92889 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC17.34■□□□□ 0.37
ERCC4Q92889 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.34■□□□□ 0.37
ERCC4Q92889 AL109936.8-201ENST00000641772 604 ntBASIC17.34■□□□□ 0.37
ERCC4Q92889 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ERCC4Q92889 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
ERCC4Q92889 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ERCC4Q92889 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
ERCC4Q92889 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ERCC4Q92889 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.33■□□□□ 0.37
ERCC4Q92889 BX640514.1-201ENST00000583223 1918 ntBASIC17.33■□□□□ 0.37
ERCC4Q92889 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.33■□□□□ 0.37
ERCC4Q92889 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
ERCC4Q92889 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ERCC4Q92889 AL121723.1-201ENST00000445194 1519 ntBASIC17.33■□□□□ 0.37
ERCC4Q92889 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ERCC4Q92889 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
ERCC4Q92889 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 AL139400.1-201ENST00000366220 510 ntBASIC17.33■□□□□ 0.36
ERCC4Q92889 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC17.33■□□□□ 0.36
ERCC4Q92889 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
ERCC4Q92889 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.33■□□□□ 0.36
ERCC4Q92889 FAM8A3P-201ENST00000427218 844 ntBASIC17.33■□□□□ 0.36
ERCC4Q92889 CNN2P11-201ENST00000429351 262 ntBASIC17.33■□□□□ 0.36
ERCC4Q92889 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.33■□□□□ 0.36
ERCC4Q92889 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
ERCC4Q92889 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.33■□□□□ 0.36
ERCC4Q92889 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
ERCC4Q92889 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.33■□□□□ 0.36
ERCC4Q92889 TEX28P1-201ENST00000613479 1221 ntBASIC17.33■□□□□ 0.36
ERCC4Q92889 AL138828.2-201ENST00000615812 383 ntBASIC17.33■□□□□ 0.36
ERCC4Q92889 TEX28P2-201ENST00000617764 1221 ntBASIC17.33■□□□□ 0.36
ERCC4Q92889 AC027601.5-201ENST00000624065 2482 ntBASIC17.33■□□□□ 0.36
ERCC4Q92889 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC17.33■□□□□ 0.36
ERCC4Q92889 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
ERCC4Q92889 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
ERCC4Q92889 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC4Q92889 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC17.32■□□□□ 0.36
ERCC4Q92889 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
ERCC4Q92889 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 AC041040.2-201ENST00000622926 2899 ntBASIC17.32■□□□□ 0.36
ERCC4Q92889 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
ERCC4Q92889 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC4Q92889 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC17.32■□□□□ 0.36
ERCC4Q92889 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
ERCC4Q92889 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.32■□□□□ 0.36
ERCC4Q92889 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC4Q92889 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
ERCC4Q92889 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC17.32■□□□□ 0.36
ERCC4Q92889 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC4Q92889 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.32■□□□□ 0.36
ERCC4Q92889 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.32■□□□□ 0.36
ERCC4Q92889 AC069262.1-201ENST00000539058 672 ntBASIC17.32■□□□□ 0.36
ERCC4Q92889 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC4Q92889 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.32■□□□□ 0.36
ERCC4Q92889 AC010336.2-201ENST00000564226 506 ntBASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms