Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 RN7SL219P-201ENST00000582872 296 ntBASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 AC018442.1-201ENST00000421439 2061 ntBASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 AC005229.1-201ENST00000392885 409 ntBASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 BRWD1P1-201ENST00000401091 371 ntBASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 ANKRD19P-201ENST00000338192 862 ntBASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 AL590640.2-201ENST00000457038 527 ntBASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 RN7SL752P-201ENST00000463779 287 ntBASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 CD74-212ENST00000524315 584 ntTSL 5 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 AC133552.6-201ENST00000613406 534 ntBASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.46■□□□□ 0.07
SHROOM3Q8TF72 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.46■□□□□ 0.06
SHROOM3Q8TF72 AL137783.1-201ENST00000623494 1896 ntBASIC15.46■□□□□ 0.06
SHROOM3Q8TF72 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC15.46■□□□□ 0.06
SHROOM3Q8TF72 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
SHROOM3Q8TF72 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
SHROOM3Q8TF72 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.06
SHROOM3Q8TF72 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
SHROOM3Q8TF72 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
SHROOM3Q8TF72 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
SHROOM3Q8TF72 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC15.46■□□□□ 0.06
SHROOM3Q8TF72 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.45■□□□□ 0.06
SHROOM3Q8TF72 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms