Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 CICP13-201ENST00000422015 2789 ntBASIC14.19□□□□□ -0.14
BEST3Q8N1M1 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 AC084364.1-201ENST00000551967 1556 ntBASIC14.19□□□□□ -0.14
BEST3Q8N1M1 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 PCDHA3-202ENST00000532566 4594 ntBASIC14.19□□□□□ -0.14
BEST3Q8N1M1 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 AC092658.1-201ENST00000505836 891 ntBASIC14.19□□□□□ -0.14
BEST3Q8N1M1 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.19□□□□□ -0.14
BEST3Q8N1M1 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 TNRC18P2-201ENST00000417666 2714 ntBASIC14.18□□□□□ -0.14
BEST3Q8N1M1 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 RNU1-114P-201ENST00000365297 166 ntBASIC14.18□□□□□ -0.14
BEST3Q8N1M1 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 AC025279.2-201ENST00000569730 653 ntBASIC14.18□□□□□ -0.14
BEST3Q8N1M1 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 AC145423.3-201ENST00000615987 467 ntBASIC14.18□□□□□ -0.14
BEST3Q8N1M1 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.18□□□□□ -0.14
BEST3Q8N1M1 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
BEST3Q8N1M1 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms