Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 DRD5P1-201ENST00000456605 1438 ntBASIC13.55□□□□□ -0.24
SKA3Q8IX90 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
SKA3Q8IX90 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SKA3Q8IX90 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 AC091951.1-201ENST00000512854 2465 ntBASIC13.54□□□□□ -0.24
SKA3Q8IX90 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 VDAC1P7-201ENST00000462417 847 ntBASIC13.54□□□□□ -0.24
SKA3Q8IX90 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 GAPDHP40-201ENST00000505218 1006 ntBASIC13.54□□□□□ -0.24
SKA3Q8IX90 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 AC138761.1-201ENST00000584393 385 ntBASIC13.54□□□□□ -0.24
SKA3Q8IX90 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC13.54□□□□□ -0.24
SKA3Q8IX90 AC007431.3-201ENST00000623221 587 ntBASIC13.54□□□□□ -0.24
SKA3Q8IX90 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 PPP1R26P4-201ENST00000619065 3527 ntBASIC13.54□□□□□ -0.24
SKA3Q8IX90 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 AC139749.1-202ENST00000617529 3139 ntBASIC13.54□□□□□ -0.24
SKA3Q8IX90 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
SKA3Q8IX90 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.54□□□□□ -0.24
SKA3Q8IX90 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 AC026410.3-201ENST00000514280 936 ntBASIC13.53□□□□□ -0.24
SKA3Q8IX90 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 AC092552.1-201ENST00000547243 906 ntBASIC13.53□□□□□ -0.24
SKA3Q8IX90 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 TMEM261P1-201ENST00000604899 340 ntBASIC13.53□□□□□ -0.24
SKA3Q8IX90 AC008494.3-201ENST00000606615 944 ntBASIC13.53□□□□□ -0.24
SKA3Q8IX90 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.53□□□□□ -0.24
SKA3Q8IX90 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
SKA3Q8IX90 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms